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Information on SUBCLASS 3.3.5
Subclass Accession number: 5480
Subclass: 3.3.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 20.4 +/- 19.7
Average RMSD (Å) : 0.655 +/- 0.242

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: ppchcGh
(φψ)-conformation: aalpaeb
Pattern: [AFILTV]x[ADEKNQRST][aiktv][agilptv][adekqrs][afily][AFILMVW]x[adeknqst][ehknqrsy][GKNQS][AFILMV][adegk][G][ACFGILVW]x[afilvw]
Conservation:-0.061-0.760-0.011-0.277-0.365-0.571-0.2770.289-0.403-0.045-0.6270.8230.061-0.1253.678-0.551-0.7970.020
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d2k_A_1441d2k   A151168ADTSLKLMKDLGFDGIDIHHHHHHHHHHHT-SEEEEaaaaaaaaaaavxaebbb
1d2k_A_3571d2k   A360377AGKKAEYITKNGMGGGMWHHHHHHHHHHTT--EEEEaaaaaaaaaaalxaebbb
1e9l_A_1131e9l   A120137IQSVIRFLRQYNFDGLNLHHHHHHHHHHTT-SEEEEaaaaaaaaaaavxaebbx
1edq_A_5181edq   A521538VQAKGKYVLDKQLGGLFSHHHHHHHHHHHT--EEEEaaaaaaaaaaavxaebbb
1h7w_A_7171h7w   A717734IVSIARAAKEGGADGVTAHHHHHHHHHHHT-SEEEEaaaaaaaaaaagxaebbb
1hjx_A_1131hjx   A120137IKSVPPFLRTHGFDGLDLHHHHHHHHHHHT-SEEEEaaaaaaaaaaavxaebbx
1hjx_A_3311hjx   A334351VKSKVQYLKDRQLAGAMVHHHHHHHHHHTT-SEEEEaaaaaaaaaaalxaebbb
1hkk_A_1131hkk   A120137VNSAIRFLRKYSFDGLDLHHHHHHHHHHHT--EEEEaaaaaaaaaaavxaebbx
1hkk_A_3371hkk   A340357FKTKVSYLKQKGLGGAMVHHHHHHHHHHTT-SEEEEaaaaaaaaaaavxaebbb
1ji2_A_3011ji2   A307324LFDVARFWMEQGIDGWRLHHHHHHHHHHTT--EEEEaaaaaaaaaaavxaebbx
1jnd_A_1051jnd   A112129IRSAYELVKTYGFDGLDLHHHHHHHHHHTT-SEEEEaaaaaaaaaaavxaebbx
1jnd_A_3731jnd   A376393ASNKAAYARVKNLGGVALHHHHHHHHHHTT-SEEEEaaaaaaaaaaalxaebbb
1kfw_A_3911kfw   A394411TKQKTDYIVSKGLGGGMWHHHHHHHHHHTT--EEEEaaaaaaaaaaavxaebbb
1p77_A_431p77   A4360FEQQLLAFFEEGAKGCNIHHHHHHHHHHTT--EEEEaaaaaaaaaaagxaebxb
1q7z_A_1211q7z   A128145FRETVEIMVEEGVDGIIFHHHHHHHHHHTT-SEEEEaaaaaaaaaaavxaebbx
1qho_A_2041qho   A210227LTDAAVQLVAHGADGLRIHHHHHHHHHHTT--EEEEaaaaaaaaaaagpaebbx
1qzo_A_3101qzo   A313330VKNKARYLKNRQLAGAMVHHHHHHHHHHTT-SEEEEaaaaaaaaaaalxaebbb
1v93_A_2431v93   A254271AVRQVAELLEAGVEGVHFHHHHHHHHHHTT-SEEEEaaaaaaaaaaavxaebbb
3pmg_A_953pmg   A95112TPAVSCIIRKIKAIGGIIHHHHHHHHHHHT-SEEEEaaaaaaaaaaalxaebbb
8abp_*_438abp   -4663TLNAIDSLAASGAKGFVIHHHHHHHHHHTT--EEEEaaaaaaaaaaavxaebxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e9l_A_1131e9l   A     GCSD-GLUCOSAMINE N - 136
1e9l_A_1131e9l   A     GCSD-GLUCOSAMINE D - 138
1hjx_A_3311hjx   A     GOLGLYCEROL R - 344
1hjx_A_3311hjx   A     GOLGLYCEROL W - 352
1hkk_A_1131hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS N - 115
1hkk_A_1131hkk   A     ZNZINC ION N - 115
1hkk_A_1131hkk   A     AMIALLOSAMIZOLINE D - 136
1hkk_A_1131hkk   A     AMIALLOSAMIZOLINE D - 138
1hkk_A_3371hkk   A     AMIALLOSAMIZOLINE M - 356
1hkk_A_3371hkk   A     NAAN-ACETYL-D-ALLOSAMINE W - 358
1hkk_A_3371hkk   A     AMIALLOSAMIZOLINE W - 358
1q7z_A_1211q7z   A     CDCADMIUM ION T - 147
1qho_A_2041qho   A     ABDACARBOSE DERIVED HEXASACCHARIDE R - 226
1v93_A_2431v93   A     DOXDIOXANE K - 244
1v93_A_2431v93   A     DOXDIOXANE A - 245
1v93_A_2431v93   A     DOXDIOXANE V - 246
1v93_A_2431v93   A     DOXDIOXANE E - 248
1v93_A_2431v93   A     DOXDIOXANE I - 249
1v93_A_2431v93   A     DOXDIOXANE V - 258
1v93_A_2431v93   A     DOXDIOXANE L - 262
1v93_A_2431v93   A     DOXDIOXANE E - 263
1v93_A_2431v93   A     DOXDIOXANE A - 264
1v93_A_2431v93   A     DOXDIOXANE G - 265
1v93_A_2431v93   A     DOXDIOXANE G - 268
1v93_A_2431v93   A     DOXDIOXANE V - 269
1v93_A_2431v93   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 270
1v93_A_2431v93   A     DOXDIOXANE H - 270
1v93_A_2431v93   A     DOXDIOXANE F - 271
1v93_A_2431v93   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 272
3pmg_A_953pmg   A     MGMAGNESIUM ION T - 95
8abp_*_438abp   *     GLAALPHA D-GALACTOSE C - 64
8abp_*_438abp   *     GLBBETA-D-GALACTOSE C - 64
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hjx_A_1131hjx   A BC5SO4 BINDING SITE FOR CHAIN AR - 117
1hjx_A_1131hjx   A BC5SO4 BINDING SITE FOR CHAIN AK - 121
1hjx_A_3311hjx   A CC2GOL BINDING SITE FOR CHAIN AW - 352
1hkk_A_1131hkk   A AC8ZN2 BINDING SITE FOR CHAIN AN - 115
1hkk_A_3371hkk   A AC2NAA BINDING SITE FOR CHAIN AW - 358

Clusters included in this Subclass
CLUSTER: HE.4.34