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Information on SUBCLASS 3.4.3
Subclass Accession number: 5489
Subclass: 3.4.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 13.6 +/- 17.4
Average RMSD (Å) : 0.771 +/- 0.243

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXXXpXX
(φψ)-conformation: aabaabp
Pattern: [ailvy]x[adegkt]xx[adekrs]xx[EKPT][deknqt]xx[fgiltv][filv]x
Conservation:0.380-0.675-0.803-0.070-0.7300.036-0.187-0.7053.0210.891-0.469-0.5910.0530.692-0.845
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bfd_*_4061bfd   -410424AIGVQLAEPERQVIAHHHHHHH-TTS-EEEaaaaaaabaabxxbx
1es9_A_1101es9   A121135VQLVNERQPQARVVVHHHHHHHSTT-EEEEaaaaaaabaaxxbbb
1ewq_A_151ewq   A2034YVELRDQYPDYLLLFHHHHHHH-TTSEEEEaaaaaaabaabxxbx
1fp1_D_2221fp1   D224238LELIISKYPLIKGINHHHHHHH-TT-EEEEaaaaaaabaaxxxbx
1gk8_I_861gk8   I93107IVACTKAFPDAYVRLHHHHHHH-TTSEEEEaaaaaaabaaxxbbx
1gpu_A_2241gpu   A230244AIAQAKLSKDKPTLIHHHHHHH-TTS-EEEaaaaaaaxaabxbbb
1i36_A_921i36   A95109VRMASSLIEKGGFVDHHHHHHH-SSSEEEEaaaaaaaxaabxbbx
1iib_A_641iib   A6478LPEIQRLLPNKPVEVHHHHHHH-TTS-EEEaaaaaaabaabwbbx
1itz_A_2351itz   A241255AIKEAKAVTDKPTLIHHHHHHH--SS-EEEaaaaaaaxaabxbbb
1j6u_A_3221j6u   A329343LQTAKEVFENEKIVVHHHHHHH-SSSEEEEaaaaaaabaaxxbbb
1kyz_A_2131kyz   A215229INTIVSKYPTIKGINHHHHHHH-TTSEEEEaaaaaaabaaxxxbx
1ozh_A_4251ozh   A429443AIGAWLVNPERKVVSHHHHHHHSTTSEEEEaaaaaaabaabxbbb
1qgd_A_2211qgd   A227241AVEEARAVTDKPSLLHHHHHHH--SS-EEEaaaaaaaxaabxbbx
1qgo_A_151qgo   A2640ERDLAASCPDRDLFRHHHHHHT-TTSEEEEaaaaaaabaabxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bfd_*_4061bfd   *     TPPTHIAMINE DIPHOSPHATE I - 426
1bfd_*_4061bfd   *     CACALCIUM ION G - 427
1bfd_*_4061bfd   *     TPPTHIAMINE DIPHOSPHATE G - 427
1ewq_A_151ewq   A     MSESELENOMETHIONINE V - 21
1ewq_A_151ewq   A     MSESELENOMETHIONINE R - 24
1ewq_A_151ewq   A     MSESELENOMETHIONINE D - 25
1fp1_D_2221fp1   D     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 223
1fp1_D_2221fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE N - 223
1fp1_D_2221fp1   D     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 239
1fp1_D_2221fp1   D     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 240
1i36_A_921i36   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 112
1kyz_A_2131kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 214
1kyz_A_2131kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 230
1kyz_A_2131kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 231
1ozh_A_4251ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE S - 445
1ozh_A_4251ozh   A     MGMAGNESIUM ION G - 446
1ozh_A_4251ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE G - 446

Clusters included in this Subclass
CLUSTER: HE.3.188
CLUSTER: HE.4.116
CLUSTER: HE.4.219
CLUSTER: HE.5.106
CLUSTER: HE.5.142
CLUSTER: HE.6.93