Information on SUBCLASS 3.5.8 |
Subclass Accession number: 5508
Subclass: 3.5.8 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 7.5 +/- 10.4 Average RMSD (Å) : 0.875 +/- 0.189 Consensus geometry
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Consensus Sequence: | hXchXXX |
(φψ)-conformation: | aalppbb |
Pattern: | x | [EGS] | [AFKV] | [ACL] | x | [AEQS] | x | x | x | x | [ACLV] | [GKQR] | [AL] | x | [DG] | [GILV] | [KPQT] | x | x | [ACLV] |
Conservation: | -0.945 | 0.866 | -0.869 | 0.794 | -0.717 | 0.576 | -1.097 | -0.188 | -0.793 | -1.097 | 0.348 | 0.348 | 0.880 | -0.945 | 3.067 | -0.337 | 0.120 | 0.281 | -0.641 | 0.348 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ewk_A_165 | 1ewk | A | 165 | 184 | SSVAIQVQNLLQLFDIPQIA | HHHHHHHHHHHGGGT--EEE | aaaaaaaaaaaaaalbxbbx |
1ja9_A_176 | 1ja9 | A | 186 | 205 | EGFCRAFAVDCGAKGVTVNC | HHHHHHHHHHHGGGT-EEEE | aaaaaaaaaaaaaavbxbbb |
1jnr_A_32 | 1jnr | A | 35 | 54 | CGAAYEAAYWAKLGGLKVTL | HHHHHHHHHHHTTTT--EEE | aaaaaaaaaaaaaalxxbbb |
1moq_*_523 | 1moq | - | 526 | 545 | LEKLKSNIEEVRARGGQLYV | HHHHHHHHHHTGGGT--EEE | aaaaaaaaaaaaaavxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ewk_A_165 | 1ewk | A | GLUGLUTAMIC ACID | S - 165 |
1ewk_A_165 | 1ewk | A | GLUGLUTAMIC ACID | S - 166 |
1ja9_A_176 | 1ja9 | A | NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Y - 178 |
1ja9_A_176 | 1ja9 | A | PYQPYROQUILON | Y - 178 |
1ja9_A_176 | 1ja9 | A | NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | K - 182 |
1ja9_A_176 | 1ja9 | A | PYQPYROQUILON | K - 182 |
1ja9_A_176 | 1ja9 | A | NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | A - 207 |
1ja9_A_176 | 1ja9 | A | NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | P - 208 |
1ja9_A_176 | 1ja9 | A | PYQPYROQUILON | P - 208 |
1jnr_A_32 | 1jnr | A | FADFLAVIN-ADENINE DINUCLEOTIDE | F - 32 |
1jnr_A_32 | 1jnr | A | FADFLAVIN-ADENINE DINUCLEOTIDE | S - 33 |
1jnr_A_32 | 1jnr | A | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 34 |
1jnr_A_32 | 1jnr | A | FADFLAVIN-ADENINE DINUCLEOTIDE | V - 55 |
1moq_*_523 | 1moq | * | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | A - 547 |
1moq_*_523 | 1moq | * | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | D - 548 |
Clusters included in this Subclass |
CLUSTER: HE.6.302 |
CLUSTER: HE.7.161 |