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Information on SUBCLASS 3.6.4
Subclass Accession number: 5513
Subclass: 3.6.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 17.9 +/- 18.1
Average RMSD (Å) : 0.500 +/- 0.167

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: hppXphX
(φψ)-conformation: aapaabb
Pattern: [cknqrst][aenqr][AILVW][AEFL][EGNRST][DKNRS][ekprs][DKRT][AFIKLV]xx
Conservation:-1.618-0.7730.2951.0850.1871.455-0.2310.906-0.086-1.219-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bo4_A_641bo4   A6878GNLLRSKTFIAHHHHHSSSEEEaaaaaxaabbb
1eup_A_451eup   A4958KAALSDLRLS.HHHHH-TTEE.aaaaaxaaxx.
1gwi_A_491gwi   A5362KALLTDPRLV.HHHHT-TTEE.aaaaaxaaxb.
1jfb_A_481jfb   A5261CFVATSEKLS.HHHHH-TTEE.aaaaaxaabb.
1mky_A_1931mky   A198208NAILNKERALVHHHHTSTTEEEaaaaaxaabbx
1n40_A_481n40   A5261TQVLEDRRFS.HHHHT-TTEE.aaaaabaaxx.
1nk4_A_3551nk4   A358368VAWLGDETKKKHHHHH-TTSEEaaaaaxaaxxb
1nx9_A_5021nx9   A502512REAESRPDVVTHHHHTSTTEEEaaaaaxaabbb
1odo_A_461odo   A5059KQLLTSSDVS.HHHTT-TTEE.aaaaaxaabb.
1q5d_A_551q5d   A5968SAVFRDERFA.HHHHT-TTEE.aaaaabaabx.
1vdc_*_1841vdc   -188198QRALSNPKIDVHHHHT-TTEEEaaaaaxaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1eup_A_451eup   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 52
1gwi_A_491gwi   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 56
1jfb_A_481jfb   A     GOLGLYCEROL V - 54
1jfb_A_481jfb   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 55
1jfb_A_481jfb   A     GOLGLYCEROL A - 55
1jfb_A_481jfb   A     GOLGLYCEROL T - 56
1jfb_A_481jfb   A     GOLGLYCEROL S - 57
1jfb_A_481jfb   A     GOLGLYCEROL E - 58
1jfb_A_481jfb   A     GOLGLYCEROL L - 60
1jfb_A_481jfb   A     GOLGLYCEROL S - 61
1mky_A_1931mky   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 193
1mky_A_1931mky   A     GDPGUANOSINE-5'-DIPHOSPHATE S - 194
1mky_A_1931mky   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 195
1mky_A_1931mky   A     MSESELENOMETHIONINE L - 196
1mky_A_1931mky   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 196
1mky_A_1931mky   A     MSESELENOMETHIONINE F - 197
1mky_A_1931mky   A     MSESELENOMETHIONINE A - 199
1mky_A_1931mky   A     MSESELENOMETHIONINE I - 200
1mky_A_1931mky   A     PO4PHOSPHATE ION N - 202
1mky_A_1931mky   A     PO4PHOSPHATE ION K - 203
1mky_A_1931mky   A     PO4PHOSPHATE ION E - 204
1mky_A_1931mky   A     PO4PHOSPHATE ION R - 205
1n40_A_481n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 55
1n40_A_481n40   A     SULSULFATE ANION R - 58
1n40_A_481n40   A     SULSULFATE ANION F - 60
1n40_A_481n40   A     SULSULFATE ANION S - 61
1odo_A_461odo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 53
1q5d_A_551q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 62

Clusters included in this Subclass
CLUSTER: HE.3.128
CLUSTER: HE.4.106
CLUSTER: HE.5.139