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Information on SUBCLASS 4.7.1
Subclass Accession number: 8443
Subclass: 4.7.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 12.4 +/- 14.8
Average RMSD (Å) : 0.906 +/- 0.416

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXXXXhXX
(φψ)-conformation: aababpbb
Pattern: [adeknqrs]x[fgilvy][aegknqrt][adekqrs][afiltv]x[eknpqr]x[aikltv][dekpqs]x[aglp]xx[agilpvw]x
Conservation:-0.261-1.1581.534-0.3040.7250.4150.1232.159-0.3310.623-0.161-1.2181.075-0.576-0.637-0.350-1.658
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bif_*_3041bif   -304319KRTIQTAEALSVPYEQ.HHHHHHHTTSSS--EE.aaaaaaaaaxaxwbbx.
1dhp_A_1121dhp   A117133QHFKAIAEHTDLPQILYHHHHHHHTT-SS-EEEEaaaaaaaaabaxwbbxb
1fpr_A_4291fpr   A436452DQINQRQESLPHAGPIIHHHHHHHTTSTT---EEaaaaaaaaaxabxxpxx
1geq_A_651geq   A7086WIVKEFRRHSSTPIVLMHHHHHHHTT----EEEEaaaaaaaaabappbbxb
1hgx_A_501hgx   A5167FFYTDLLKHLDFQLEPDHHHHHHHTT--S--EEEaaaaaaaaaxabxbbwb
1i4n_A_921i4n   A92108AFVRAARNLTCRPILAKHHHHHHHTT--S-EEEEaaaaaaaaabaxpbxxx
1jqe_A_1201jqe   A121137SEYQSRMLEKKELQKWDHHHHHHHTTSSS---EEaaaaaaaaababxxxba
1jvn_A_3111jvn   A314330EVLKQAAKTVFVPLTVGHHHHHHTTT--S-EEEEaaaaaaaaaxabpbbbb
1ka9_F_601ka9   F6581DVVARVAERVFIPLTVGHHHHHHHTT--S-EEEEaaaaaaaaababpbbbb
1l6s_A_2521l6s   A253269DIVRELRERTELPIGAYHHHHHHHTT-SS-EEEEaaaaaaaaabaxxbxbb
1ldc_B_3321ldc   B333349KDIEELKKKTKLPIVIKHHHHHHHHT-SS-EEEEaaaaaaaaabapwbbxx
1mv8_A_971mv8   A104120REIGFAIREKSERHTVVHHHHHHHTT--S--EEEaaaaaaaaaxaxxbbbb
1o5k_A_1111o5k   A116132QHYKYISERTDLGIVVYHHHHHHHTT-SS-EEEEaaaaaaaaabaxxbbxb
1ogs_A_1571ogs   A159175PLIHRALQLAQRPVSLLHHHHHHHHH-SS--EEEaaaaaaaaapabwbbxb
1onr_A_661onr   A8096NIGLEILKLVPGRISTEHHHHHHHTT-SS-EEEEaaaaaaaaabaFbbbbx
1thf_D_581thf   D6480ELVEKVAEQIDIPFTVGHHHHHHHTT--S-EEEEaaaaaaaaababxbbbb
1ujp_A_291ujp   A3449QAVEEVLPYADLLEIG.HHHHHHGGG-SSEEEE.aaaaaaaaaxabbbbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bif_*_3041bif   *     PO4PHOSPHATE ION R - 305
1fpr_A_4291fpr   A     PTRO-PHOSPHOTYROSINE H - 454
1i4n_A_921i4n   A     SULSULFATE ANION K - 108
1jqe_A_1201jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 120
1jqe_A_1201jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 121
1jqe_A_1201jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE M - 141
1jqe_A_1201jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 142
1l6s_A_2521l6s   A     DSB4,7-DIOXOSEBACIC ACID Y - 269
1l6s_A_2521l6s   A     DSB4,7-DIOXOSEBACIC ACID Q - 270
1ldc_B_3321ldc   B     FMNFLAVIN MONONUCLEOTIDE K - 349
1mv8_A_971mv8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 98
1mv8_A_971mv8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 101
1mv8_A_971mv8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 102
1mv8_A_971mv8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 105
1o5k_A_1111o5k   A     MCLNZ-(1-CARBOXYETHYL)-LYSINE V - 130
1o5k_A_1111o5k   A     CACALCIUM ION V - 130
1o5k_A_1111o5k   A     MCLNZ-(1-CARBOXYETHYL)-LYSINE V - 131
1o5k_A_1111o5k   A     CACALCIUM ION V - 131
1o5k_A_1111o5k   A     MCLNZ-(1-CARBOXYETHYL)-LYSINE Y - 132
1o5k_A_1111o5k   A     CACALCIUM ION Y - 132
1thf_D_581thf   D     PO4PHOSPHATE ION G - 80
1ujp_A_291ujp   A     CITCITRIC ACID E - 47
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ogs_A_1571ogs   A AC5SO4 BINDING SITE FOR CHAIN AQ - 169
1ogs_A_1571ogs   A AC5SO4 BINDING SITE FOR CHAIN AR - 170

Clusters included in this Subclass
CLUSTER: HE.6.179
CLUSTER: HE.6.45
CLUSTER: HE.7.2
CLUSTER: HE.8.32