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PDB code:

Information on SUBCLASS 5.2.1

Subclass Accession number: 8554 Subclass: 5.2.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 19 Average sequence ID (%) : 15.8 +/- 19.3 Average RMSD (Å) : 0.837 +/- 0.293 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b8p_A_101	1b8p	A	117	131	KAIDAVASRNIKVLV	HHHHHHS-TT-EEEE	aaaaaaxpaapbbbb
1bdm_A_102	1bdm	A	113	127	RALAEVAKKDVKVLV	HHHHHHS-TT-EEEE	aaaaaaxpaapxbbb
1bfd_*_355	1bfd	-	360	374	DTLNDMAPENAIYLN	HHHHHHS-TT-EEEE	aaaaaaxxaaxbbbb
1bs0_A_108	1bs0	A	114	128	AVIAAMMAKEDRIAA	HHHHHH--TT-EEEE	aaaaaabbaaxbbbb
1civ_A_136	1civ	A	152	166	KALNAVASPNVKVMV	HHHHHHS-TT-EEEE	aaaaaabpaaxxbbx
1dhp_A_168	1dhp	A	171	185	NQIKELVSDDFVLLS	HHHHHHS-TTSEEEE	aaaaaabxaaxxbbx
1ixm_A_107	1ixm	A	119	133	HLFDQAVSRESENHL	HHHHHHB-TTS--EE	aaaaaaxxaabxxbb
1jtk_A_87	1jtk	A	91	105	QVISELCTKDVIVVL	HHHHHHS-TT-EEEE	aaaaaabxaapxbbb
1lar_A_1498	1lar	A	1505	1519	RRVKACNPLDAGPMV	HHHHHHS-TT---EE	aaaaaaxpaaxxxxb
1ni4_A_69	1ni4	A	73	86	VGLEAGINPTDHLI.	HHHHHHS-TTSEEE.	aaaaaabxaaxbbb.
1nvm_A_177	1nvm	A	185	199	RAFKAVLKPETQVGM	HHHHHHS-TTSEEEE	aaaaaaxxaaxxbbb
1ols_A_93	1ols	A	97	110	VGSAAALDNTDLVF.	HHHHHTS-TTSEEE.	aaaaaaxxaaxxbb.
1oth_A_288	1oth	A	288	302	MKTAKVAASDWTFLH	HHHHHTS-TT-EEEE	aaaaaaxxaapbbbb
1pii_*_339	1pii	-	343	357	DTLREALPAHVAIWK	HHHHHHS-TTSEEEE	aaaaaaxpaaxxbbb
1pox_A_373	1pox	A	378	392	RAVNKIAEPDAIYSI	HHHHHH--TT-EEEE	aaaaaaxxaaxbbbb
1rpm_A_1071	1rpm	A	1078	1092	RQVKSKSPPSAGPLV	HHHHHHS-TTS--EE	aaaaaaxpaaxxxxx
1yfo_A_409	1yfo	A	416	430	KKVKACNPQYAGAIV	HHHHHHS-TTS--EE	aaaaaaxpaabxpxx
5mdh_A_101	5mdh	A	113	127	AALDKYAKKSVKVIV	HHHHHHS-TT-EEEE	aaaaaaxxaapbbbx
7mdh_A_140	7mdh	A	156	170	KALNAVASKNVKVLV	HHHHHHS-TT-EEEE	aaaaaaxpaaxxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bdm_A_102	1bdm	A	NAXBETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	I - 107
1bdm_A_102	1bdm	A	NAXBETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	Q - 111
1bdm_A_102	1bdm	A	NAXBETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	V - 127
1bfd_*_355	1bfd	*	CACALCIUM ION	D - 360
1bfd_*_355	1bfd	*	CACALCIUM ION	N - 363
1bfd_*_355	1bfd	*	CACALCIUM ION	D - 364
1bfd_*_355	1bfd	*	TPPTHIAMINE DIPHOSPHATE	E - 375
1civ_A_136	1civ	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	N - 143
1civ_A_136	1civ	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	I - 146
1civ_A_136	1civ	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	Q - 150
1civ_A_136	1civ	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	V - 166
1jtk_A_87	1jtk	A	ZNZINC ION	G - 87
1jtk_A_87	1jtk	A	THUTETRAHYDRODEOXYURIDINE	G - 87
1jtk_A_87	1jtk	A	ZNZINC ION	A - 88
1jtk_A_87	1jtk	A	ZNZINC ION	C - 89
1jtk_A_87	1jtk	A	THUTETRAHYDRODEOXYURIDINE	C - 89
1jtk_A_87	1jtk	A	ZNZINC ION	R - 90
1ni4_A_69	1ni4	A	MSESELENOMETHIONINE	E - 69
1ni4_A_69	1ni4	A	MSESELENOMETHIONINE	A - 70
1ni4_A_69	1ni4	A	MSESELENOMETHIONINE	C - 71
1ni4_A_69	1ni4	A	MSESELENOMETHIONINE	V - 73
1ni4_A_69	1ni4	A	MSESELENOMETHIONINE	L - 75
1ni4_A_69	1ni4	A	MSESELENOMETHIONINE	E - 76
1ni4_A_69	1ni4	A	MSESELENOMETHIONINE	I - 86
1nvm_A_177	1nvm	A	MPD2-METHYL-2,4-PENTANEDIOL	M - 177
1nvm_A_177	1nvm	A	MPD2-METHYL-2,4-PENTANEDIOL	D - 179
1nvm_A_177	1nvm	A	MNMANGANESE (II) ION	H - 200
1nvm_A_177	1nvm	A	OXLOXALATE ION	H - 200
5mdh_A_101	5mdh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 104
5mdh_A_101	5mdh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 107
5mdh_A_101	5mdh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 111
5mdh_A_101	5mdh	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 127
7mdh_A_140	7mdh	A	ZNZINC ION	V - 170

Clusters included in this Subclass

CLUSTER: HE.4.54

CLUSTER: HE.6.10

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