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Information on SUBCLASS 5.24.1
Subclass Accession number: 5799
Subclass: 5.24.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 13.3 +/- 15.4
Average RMSD (Å) : 0.820 +/- 0.303

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: hXcXpXhXX
(φψ)-conformation: aapaappbb
Pattern: [akv][AEGP][el][AFLM][aes][DEN][ekp][DEKS]x[ilvy][AFKT]x
Conservation:-0.924-0.292-0.6520.352-0.0012.714-0.1240.840-0.882-0.359-0.7180.047
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h7e_A_1311h7e   A131142AAEAAEPSTVKVHHHHT-TTS-EEaaaaaxaabxxb
1kfi_A_2191kfi   A223234KGLFSNKDFSFRHHHHT-TT--EEaaaaaxaabbbb
1kfs_A_3981kfs   A406417KPLLEDEKALKVHHHHT-TTS-EEaaaaaxaaxxbb
1n71_A_331n71   A3748VEEMMNPERIAVHHHHT-TTSEEEaaaaapaaxbbb
1q4g_A_1391q4g   A139150WESFSNVSYYTRHHHHH-TTB-EEaaaaaxaaxxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1q4g_A_1391q4g   A     GOLGLYCEROL W - 139
1q4g_A_1391q4g   A     NAGN-ACETYL-D-GLUCOSAMINE E - 140
1q4g_A_1391q4g   A     GOLGLYCEROL E - 140
1q4g_A_1391q4g   A     GOLGLYCEROL S - 143
1q4g_A_1391q4g   A     NAGN-ACETYL-D-GLUCOSAMINE N - 144
1q4g_A_1391q4g   A     NAGN-ACETYL-D-GLUCOSAMINE S - 146
1q4g_A_1391q4g   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 147
1q4g_A_1391q4g   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 148

Clusters included in this Subclass
CLUSTER: HE.5.181
CLUSTER: HE.6.129