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Information on SUBCLASS 5.25.1
Subclass Accession number: 386
Subclass: 5.25.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.2 (>75 %)  3.2.2 (>75 %)  3.2.2.22
GO : GO:0016798 (>75 %)  GO:0016799 (>75 %)  GO:0030597 (>75 %)  
SCOP : 56370 (>75 %)  56371 (>75 %)  56372 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 11.8 +/- 12.4
Average RMSD (Å) : 0.900 +/- 0.173

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: hXXhhXXph
(φψ)-conformation: aapplpabb
Pattern: [ILY][EHK][HKR][AVW][GL][AQS]x[AP][AG]x[ART][ER][APV][LVW][ILV][ALM][CT]
Conservation:-0.1730.1730.404-1.096-1.245-0.404-1.0961.2091.281-0.408-0.7500.928-0.865-0.6350.865-0.4042.215
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cjw_A_1351cjw   A144160LHHVGAQPAVRRAVLMCHHHHHTSTT--EEEEEEaaaaaaxxNxabbbbbb
1h7e_A_291h7e   A3450YERALQVAGVAEVWVATHHHHHT-TT--EEEEEEaaaaaaxxvbabbbbbb
1jz7_A_5201jz7   A520536IKKWLSLPGETRPLILCHHHHHTSTT----EEEEaaaaaappvxaxxbbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cjw_A_1351cjw   A     COTCOA-S-ACETYL TRYPTAMINE K - 135
1cjw_A_1351cjw   A     COTCOA-S-ACETYL TRYPTAMINE G - 136
1cjw_A_1351cjw   A     COTCOA-S-ACETYL TRYPTAMINE S - 137
1cjw_A_1351cjw   A     COTCOA-S-ACETYL TRYPTAMINE V - 138
1cjw_A_1351cjw   A     COTCOA-S-ACETYL TRYPTAMINE L - 158
1cjw_A_1351cjw   A     COTCOA-S-ACETYL TRYPTAMINE M - 159
1cjw_A_1351cjw   A     COTCOA-S-ACETYL TRYPTAMINE C - 160
1jz7_A_5201jz7   A     GALD-GALACTOSE E - 537

Clusters included in this Subclass
CLUSTER: HE.7.61