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PDB code:

Information on SUBCLASS 5.3.1

Subclass Accession number: 8560 Subclass: 5.3.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 23 Average sequence ID (%) : 17.8 +/- 18.3 Average RMSD (Å) : 0.817 +/- 0.248 Consensus geometry d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
13pk_A_117	13pk	A	117	130	ADVVSKMSPGDVVL	HHHHHT--TT-EEE	aaaaaaxbpvxbbb
1ajs_A_170	1ajs	A	174	187	LSDLENAPEFSIFV	HHHHHHS-TT-EEE	aaaaaaxppvpxbx
1cqx_A_235	1cqx	A	238	251	NLLHDHVNVGDQVK	HHHHHH--TT-EEE	aaaaaabbpgxbbb
1dbg_A_31	1dbg	A	35	48	YQVVKEVKPGGLVQ	HHHHHH--TT-EEE	aaaaaapbpvxbbb
1e89_A_59	1e89	A	62	75	LTFLEKLPQGEKVI	HHHHHHS-TT--EE	aaaaaapppvxbbb
1fsu_*_211	1fsu	-	220	233	IALITNHPPEKPLF	HHHHHT--TTS-EE	aaaaaaxxpvbwbb
1k7c_A_53	1k7c	A	55	68	ENIADVVTAGDYVI	HHHHHH--TT-EEE	aaaaaaxbpvxbbb
1mgt_A_91	1mgt	A	98	111	EWLTKNVKRGSVIT	HHHHHHS-TT--EE	aaaaaaxxpvbbbx
1nsj_*_40	1nsj	-	44	57	RRISVELPPFVFRV	HHHHHHS-SSSEEE	aaaaaaxwxvbxbb
1nw3_A_247	1nw3	A	254	267	KERFANMKEGGRIV	HHHHTT--TT-EEE	aaaaaaxxpvxbbb
1oaa_*_19	1oaa	-	26	39	PQLARLLSPGSVML	HHHHTTB-TT-EEE	aaaaaaxxpvxbbb
1ovm_A_362	1ovm	A	367	380	RTLQTFIRPGDIIL	HHHHHH--TT-EEE	aaaaaaxbpvxbbb
1php_*_97	1php	-	100	113	KAAVDRLNEGDVLL	HHHHHT--TT-EEE	aaaaaaxbpvxbbb
1qau_A_77	1qau	A	81	94	LEVLRGIASETHVV	HHHHHHS-SSSEEE	aaaaaappxvbxbb
1qj4_A_59	1qj4	A	62	75	LTFLEALPPGEKVI	HHHHHTS-TT--EE	aaaaaaxxpvxbbb
1qnt_A_94	1qnt	A	100	113	WKLLKVVKFGEVIS	HHHHHH--TT--EE	aaaaaaxxxvbbbx
1qpg_*_100	1qpg	-	103	116	EAAVKASAPGSVIL	HHHHHT--TTEEEE	aaaaaaxxpvxbbb
1sfe_*_95	1sfe	-	101	114	WQALRTIPCGETVS	HHHHTTS-TT--EE	aaaaaaxxxgbbbx
1vpe_*_97	1vpe	-	100	113	KKAVEELKEGEVLL	HHHHHT--TTEEEE	aaaaaaxxxvbbbb
1yaa_A_170	1yaa	A	174	187	LNAIQKAPEGSIFV	HHHHHHS-TT-EEE	aaaaaaxxpvxxbx
2ay1_A_170	2ay1	A	174	187	KADLAAAKKGDMVL	HHHHHT--TT-EEE	aaaaaaxxxgxbbx
2cnd_*_96	2cnd	-	98	111	TQYLDSLPVGSYID	HHHHHH--TT-EEE	aaaaaaxxxgxbbb
2cst_A_170	2cst	A	174	187	LDDMEKAPEFSIFI	HHHHHTS-TT-EEE	aaaaaaxxpvpxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ajs_A_170	1ajs	A	PLA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID	H - 189
1cqx_A_235	1cqx	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 235
1cqx_A_235	1cqx	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 236
1cqx_A_235	1cqx	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 237
1cqx_A_235	1cqx	A	FADFLAVIN-ADENINE DINUCLEOTIDE	N - 238
1fsu_*_211	1fsu	*	NAGN-ACETYL-D-GLUCOSAMINE	T - 212
1fsu_*_211	1fsu	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 213
1fsu_*_211	1fsu	*	NAGN-ACETYL-D-GLUCOSAMINE	I - 214
1fsu_*_211	1fsu	*	NAGN-ACETYL-D-GLUCOSAMINE	T - 216
1fsu_*_211	1fsu	*	NAGN-ACETYL-D-GLUCOSAMINE	K - 217
1fsu_*_211	1fsu	*	NAGN-ACETYL-D-GLUCOSAMINE	I - 220
1nw3_A_247	1nw3	A	SAMS-ADENOSYLMETHIONINE	V - 249
1oaa_*_19	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 19
1oaa_*_19	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	F - 20
1oaa_*_19	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 21
1oaa_*_19	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 41
1oaa_*_19	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 42
1ovm_A_362	1ovm	A	TPPTHIAMINE DIPHOSPHATE	Q - 362
1qj4_A_59	1qj4	A	GOLGLYCEROL	E - 79
1yaa_A_170	1yaa	A	PLPPYRIDOXAL-5'-PHOSPHATE	H - 189
2cnd_*_96	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 96
2cnd_*_96	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	M - 97
2cnd_*_96	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 98
2cnd_*_96	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	Q - 99

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e89_A_59	1e89	A	ASAACTIVE SITE A. CATALYTIC RESIDUE SER 80 IS MUTATED TO ALA	A - 80

Clusters included in this Subclass

CLUSTER: HE.4.118

CLUSTER: HE.5.142

CLUSTER: HE.5.56

CLUSTER: HE.6.12

CLUSTER: HE.7.45

CLUSTER: HE.7.74

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