Information on SUBCLASS 5.5.3 |
Subclass Accession number: 8567
Subclass: 5.5.3 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 12.0 +/- 14.6 Average RMSD (Å) : 0.800 +/- 0.283 Consensus geometry
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Consensus Sequence: | pXXXphXhh |
(φψ)-conformation: | aapaapabb |
Pattern: | x | [afkl] | [AILV] | x | [nqr] | x | x | [DEKP] | x | x | [gknr] | [ADG] | [IV] | [GLVY] | [hlv] |
Conservation: | -0.807 | -1.294 | 0.845 | 0.123 | -0.030 | 0.411 | -0.921 | 0.614 | -0.411 | -0.035 | -0.766 | 0.542 | 2.809 | -0.659 | -0.421 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e4c_P_74 | 1e4c | P | 78 | 92 | MAAYQSRPDANAVVH | HHHHHH-TT--EEEE | aaaaaabaaxabbbb |
1k0w_A_77 | 1k0w | A | 81 | 95 | RLLYQAFPSIGGIVH | HHHHHH-TT--EEEE | aaaaaabaaxabbbb |
1psd_A_67 | 1psd | A | 67 | 81 | EDVINAAEKLVAIGC | HHHHHH-SS--EEEE | aaaaaaxaaxabbbx |
2scu_B_295 | 2scu | B | 302 | 316 | FKIILSDDKVKAVLV | HHHHHHSSS--EEEE | aaaaaaxaaxabbxx |
7aat_A_107 | 7aat | A | 117 | 131 | NFLQRFFKFSRDVYL | HHHHHH-TT--EEEE | aaaaaaxaabaxbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e4c_P_74 | 1e4c | P | ZNZINC ION | F - 76 |
1e4c_P_74 | 1e4c | P | ZNZINC ION | H - 92 |
1e4c_P_74 | 1e4c | P | ZNZINC ION | N - 93 |
1k0w_A_77 | 1k0w | A | ZNZINC ION | H - 95 |
7aat_A_107 | 7aat | A | PLPPYRIDOXAL-5'-PHOSPHATE | S - 107 |
7aat_A_107 | 7aat | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 108 |
7aat_A_107 | 7aat | A | PLPPYRIDOXAL-5'-PHOSPHATE | T - 109 |
7aat_A_107 | 7aat | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 110 |
7aat_A_107 | 7aat | A | PLPPYRIDOXAL-5'-PHOSPHATE | L - 112 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e4c_P_74 | 1e4c | P | ACTACTIVE CENTER DEFINDED BY THE ZINC ION AND THE FOUR ZINC COORDINATING RESIDUES | H - 92 |
Clusters included in this Subclass |
CLUSTER: HE.4.248 |
CLUSTER: HE.5.172 |