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Information on SUBCLASS 5.5.3
Subclass Accession number: 8567
Subclass: 5.5.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 12.0 +/- 14.6
Average RMSD (Å) : 0.800 +/- 0.283

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pXXXphXhh
(φψ)-conformation: aapaapabb
Pattern: x[afkl][AILV]x[nqr]xx[DEKP]xx[gknr][ADG][IV][GLVY][hlv]
Conservation:-0.807-1.2940.8450.123-0.0300.411-0.9210.614-0.411-0.035-0.7660.5422.809-0.659-0.421
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e4c_P_741e4c   P7892MAAYQSRPDANAVVHHHHHHH-TT--EEEEaaaaaabaaxabbbb
1k0w_A_771k0w   A8195RLLYQAFPSIGGIVHHHHHHH-TT--EEEEaaaaaabaaxabbbb
1psd_A_671psd   A6781EDVINAAEKLVAIGCHHHHHH-SS--EEEEaaaaaaxaaxabbbx
2scu_B_2952scu   B302316FKIILSDDKVKAVLVHHHHHHSSS--EEEEaaaaaaxaaxabbxx
7aat_A_1077aat   A117131NFLQRFFKFSRDVYLHHHHHH-TT--EEEEaaaaaaxaabaxbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4c_P_741e4c   P     ZNZINC ION F - 76
1e4c_P_741e4c   P     ZNZINC ION H - 92
1e4c_P_741e4c   P     ZNZINC ION N - 93
1k0w_A_771k0w   A     ZNZINC ION H - 95
7aat_A_1077aat   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 107
7aat_A_1077aat   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 108
7aat_A_1077aat   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 109
7aat_A_1077aat   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 110
7aat_A_1077aat   A     PLPPYRIDOXAL-5'-PHOSPHATE L - 112
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4c_P_741e4c   P ACTACTIVE CENTER DEFINDED BY THE ZINC ION AND THE FOUR ZINC COORDINATING RESIDUESH - 92

Clusters included in this Subclass
CLUSTER: HE.4.248
CLUSTER: HE.5.172