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Information on SUBCLASS 5.62.1
Subclass Accession number: 5841
Subclass: 5.62.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 52008 (>75 %)  89562 (>75 %)  89563 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 52.6 +/- 2.3
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: LpppGXGpV
(φψ)-conformation: aappaplbb
Pattern: [AGS][KL][LV][RY][DK][LV][L][ES][EQ][EN][G][AKR][G][KQR][V][L][FV][V][D]
Conservation:-0.979-1.304-0.456-0.858-0.533-0.4560.509-0.5210.207-0.2091.848-1.1281.848-0.4580.5090.509-0.8860.5091.848
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j3l_A_451j3l   A4563ALVRKVLEEEGAGQVLFVDHHHHHHHTS--BTEEEEEEaaaaaaaaxpapvbbxbbx
1q5x_A_461q5x   A4664GLLYDLLEQNGRGRVLVVDHHHHHHHTS--TTEEEEEEaaaaaaaaxxaxvbbxxbx
1vi4_A_471vi4   A4765SKVRDVLSQNGKGKVLVVDHHHHHHHTS--TTEEEEEEaaaaaaaaxxapvbbxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1vi4_A_471vi4   A     MSESELENOMETHIONINE V - 49
1vi4_A_471vi4   A     MSESELENOMETHIONINE L - 53
1vi4_A_471vi4   A     MSESELENOMETHIONINE V - 63
1vi4_A_471vi4   A     MSESELENOMETHIONINE V - 64
1vi4_A_471vi4   A     MSESELENOMETHIONINE D - 65

Clusters included in this Subclass
CLUSTER: HE.5.323