Information on SUBCLASS 6.2.1 |
Subclass Accession number: 5855
Subclass: 6.2.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 32 Average sequence ID (%) : 19.9 +/- 20.6 Average RMSD (Å) : 0.831 +/- 0.194 Consensus geometry
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Consensus Sequence: | XXGhXXpphX |
(φψ)-conformation: | aagppaaabb |
Pattern: | [acfgiltv] | x | x | x | x | x | x | [aeknqst] | [agknq] | [afiklmv] | [dehkpqrs] | x | [dehknqrs] | [degknqr] | [filtvy] | x |
Conservation: | -0.540 | -0.654 | -0.790 | -0.809 | -0.631 | -0.340 | -0.944 | -0.337 | 2.609 | 0.523 | 0.036 | -0.386 | 0.379 | 1.003 | 1.606 | -0.722 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a5z_*_142 | 1a5z | - | 146 | 161 | TYFFLKESGMDPRKVF | HHHHHHHHT--TTTEE | aaaaaaaavxxaaabb |
1cqx_A_371 | 1cqx | A | 377 | 392 | QHDALKNLGIHEARIH | HHHHHHHTT--GGGEE | aaaaaaaavxxaaabb |
1dpt_A_70 | 1dpt | A | 81 | 96 | FEFLTKELALGQDRIL | HHHHHHHHT--GGGEE | aaaaaaaalbxaaabb |
1e9l_A_243 | 1e9l | A | 246 | 261 | IISYWKDHGAASEKLI | HHHHHHHTT--GGGEE | aaaaaaaagxxaaaxb |
1eg7_A_1019 | 1eg7 | A | 1019 | 1034 | VMELARGLGIQEDEVE | HHHHHHTTT--GGGEE | aaaaaaaavxxaaabb |
1f6d_A_150 | 1f6d | A | 152 | 167 | SRQNLLRENVADSRIF | HHHHHHHTT--GGGEE | aaaaaaaavxxaaabb |
1gv0_A_121 | 1gv0 | A | 125 | 140 | THVAWQKSGLPKERVI | HHHHHHHHT--GGGEE | aaaaaaaavxwaaabb |
1hjx_A_237 | 1hjx | A | 240 | 255 | AVGYMLRLGAPASKLV | HHHHHHHHT--GGGEE | aaaaaaaagxxaaaxb |
1hyb_A_52 | 1hyb | A | 59 | 74 | LTKALSENGIPASRYY | HHHHHHHTT--GGGEE | aaaaaaaavxpaaabb |
1hye_A_125 | 1hye | A | 129 | 144 | TYKALVDSKFERNQVF | HHHHHHHH---TTSEE | aaaaaaaavxxaaabb |
1hyh_A_145 | 1hyh | A | 149 | 164 | TALFQHVTGFPAHKVI | HHHHHHHH---GGGEE | aaaaaaaavxwaaabb |
1i0z_A_140 | 1i0z | A | 144 | 159 | TYVTWKLSGLPKHRVI | HHHHHHHH---GGGEE | aaaaaaaavxxaaabb |
1i10_A_139 | 1i10 | A | 143 | 158 | TYVAWKISGFPKNRVI | HHHHHHHH---GGGEE | aaaaaaaavxxaaabb |
1itx_A_314 | 1itx | A | 317 | 332 | GAQGHLDAGVPAAKLV | HHHHHHHHT--GGGEE | aaaaaaaagxxaaabb |
1jnd_A_255 | 1jnd | A | 258 | 273 | QVEYWLSQGFPSNKIN | HHHHHHHTT--GGGEE | aaaaaaaagxxaaabb |
1kfw_A_304 | 1kfw | A | 307 | 322 | AVKKYLAAGIDPKQLG | HHHHHHHTT--GGGEE | aaaaaaaavxpaaabb |
1ldn_A_140 | 1ldn | A | 144 | 159 | TYATWKFSGLPHERVI | HHHHHHHHT--GGGEE | aaaaaaaavxxaaabx |
1lld_A_127 | 1lld | A | 131 | 146 | THVAQKLTGLPENQIF | HHHHHHHHT--TTSEE | aaaaaaaavxwaaabb |
1mwm_A_283 | 1mwm | A | 287 | 302 | CDAVKKHTQIRDERFF | HHHHHHHHT--GGGEE | aaaaaaaalxxaaabb |
1oap_A_94 | 1oap | A | 108 | 123 | VKMYLQGKGVSADQIS | HHHHHHTTT--GGGEE | aaaaaaaavxxaaabb |
1pze_A_142 | 1pze | A | 146 | 161 | VKVMCEASGVPTNMIC | HHHHHHHH---GGGEE | aaaaaaaavxpaaabb |
1qzo_A_216 | 1qzo | A | 219 | 234 | AVSYMLRLGAPANKLV | HHHHHHHHT--GGGEE | aaaaaaaagxxaaaxb |
1r1m_A_125 | 1r1m | A | 139 | 154 | VANNLVSNGVPVSRIS | HHHHHHHTT--GGGEE | aaaaaaaagxpaaabb |
1r6t_A_208 | 1r6t | A | 218 | 233 | NAKDIIACGFDINKTF | HHHHHHTT---TTSEE | aaaaaaaagpxaaabb |
1spx_A_40 | 1spx | A | 46 | 61 | TRQQILAAGVSEQNVN | HHHHHHHTT--GGGEE | aaaaaaaavxxaaabb |
1t2d_A_128 | 1t2d | A | 132 | 147 | VQLLHQHSGVPKNKII | HHHHHHHH---GGGEE | aaaaaaaavxxaaabb |
1ur5_A_122 | 1ur5 | A | 126 | 141 | TYLAAEVSGFPKERVI | HHHHHHHH---GGGEE | aaaaaaaavxxaaabb |
1v4v_A_155 | 1v4v | A | 157 | 172 | AKANLLKEGKREEGIL | HHHHHHTTT--GGGEE | aaaaaaaavxxaaabb |
3pro_C_137 | 3pro | C | 140 | 155 | GVDFVALSGADSAQVR | HHHHHHHHT--TTTEE | aaaaaaaavxxaaabb |
6ldh_*_140 | 6ldh | - | 144 | 159 | TYVAWKLSGLPMHRII | HHHHHHHHT--GGGEE | aaaaaaaagxpaaabb |
8abp_*_206 | 8abp | - | 212 | 227 | GVRATEGQGFKAADII | HHHHHHHTT--GGGEE | aaaaaaaavxxaaabb |
9ldt_A_142 | 9ldt | A | 146 | 161 | TYVAWKISGFPKNRVI | HHHHHHHH---TTSEE | aaaaaaaavxwaaabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gv0_A_121 | 1gv0 | A | NAANAD BINDING SITE FOR CHAIN A | M - 142 |
1hjx_A_237 | 1hjx | A | BC2SO4 BINDING SITE FOR CHAIN B | Y - 239 |
1hjx_A_237 | 1hjx | A | CC4GOL BINDING SITE FOR CHAIN A | G - 242 |
1hjx_A_237 | 1hjx | A | CC4GOL BINDING SITE FOR CHAIN A | Y - 243 |
1hjx_A_237 | 1hjx | A | CC4GOL BINDING SITE FOR CHAIN A | R - 246 |
1oap_A_94 | 1oap | A | AC1SO4 BINDING SITE FOR CHAIN A | Y - 96 |
1oap_A_94 | 1oap | A | AC1SO4 BINDING SITE FOR CHAIN A | N - 97 |
1oap_A_94 | 1oap | A | AC1SO4 BINDING SITE FOR CHAIN A | L - 100 |
1oap_A_94 | 1oap | A | AC1SO4 BINDING SITE FOR CHAIN A | R - 104 |
1ur5_A_122 | 1ur5 | A | AC9CL BINDING SITE FOR CHAIN A | D - 123 |
1ur5_A_122 | 1ur5 | A | AC9CL BINDING SITE FOR CHAIN A | A - 124 |
Clusters included in this Subclass |
CLUSTER: HE.5.27 |
CLUSTER: HE.6.10 |
CLUSTER: HE.6.81 |
CLUSTER: HE.7.3 |
CLUSTER: HE.7.58 |
CLUSTER: HE.8.26 |
CLUSTER: HE.8.42 |