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Information on SUBCLASS 6.4.1
Subclass Accession number: 412
Subclass: 6.4.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.1 (>75 %)  3.1.1 (>75 %)  3.1.1.3
GO : GO:0016298 (>75 %)  GO:0016788 (>75 %)  GO:0016789 (>75 %)  
SCOP : 53473 (>75 %)  53474 (>75 %)  53577 (>75 %)  
 Number of loops: 8

Average sequence ID (%) : 18.8 +/- 19.1
Average RMSD (Å) : 0.737 +/- 0.092

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXGhXpXphX
(φψ)-conformation: aalppaaabb
Pattern: x[AIKLM][acgt]x[adv][afktv]x[AKLV]x[aest][GQ][AFIKL][DHPR][DEKPS][AEKN][GQR][FILV]x
Conservation:-1.209-0.008-0.304-0.424-0.463-0.798-0.664-0.107-1.0610.0492.817-0.122-0.1190.5690.4371.0481.442-1.084
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cqx_A_3711cqx   A375392RMQHDALKNLGIHEARIHHHHHHHHHHTT--GGGEEaaaaaaaaaavxxaaabb
1ez4_A_1401ez4   A142159ILTYATWKFSGFPKERVIHHHHHHHHHH---GGGEEaaaaaaaaaavxwaaabb
1gv1_A_1211gv1   A123140IMTHVAWVRSGLPKERVIHHHHHHHHHHT--GGGEEaaaaaaaaaavxxaaabb
1kfw_A_3041kfw   A305322DKAVKKYLAAGIDPKQLGHHHHHHHHHTT--GGGEEaaaaaaaaaavxpaaabb
1lld_A_1271lld   A129146IATHVAQKLTGLPENQIFHHHHHHHHHHT--TTSEEaaaaaaaaaavxwaaabb
1mwm_A_2831mwm   A285302LICDAVKKHTQIRDERFFHHHHHHHHHHT--GGGEEaaaaaaaaaalxxaaabb
1v4v_A_1551v4v   A155172PLAKANLLKEGKREEGILHHHHHHHHTTT--GGGEEaaaaaaaaaavxxaaabb
3pro_C_1373pro   C138155DAGVDFVALSGADSAQVRHHHHHHHHHHT--TTTEEaaaaaaaaaavxxaaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cqx_A_3711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL I - 371
1cqx_A_3711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL M - 374
1cqx_A_3711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL R - 375
1cqx_A_3711cqx   A     DGG1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)-OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL Y - 393
1ez4_A_1401ez4   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 140
1lld_A_1271lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 127
1mwm_A_2831mwm   A     ADPADENOSINE-5'-DIPHOSPHATE A - 283
1mwm_A_2831mwm   A     ADPADENOSINE-5'-DIPHOSPHATE E - 284
1mwm_A_2831mwm   A     ADPADENOSINE-5'-DIPHOSPHATE L - 285
1v4v_A_1551v4v   A     MSESELENOMETHIONINE L - 172
1v4v_A_1551v4v   A     MSESELENOMETHIONINE V - 173

Clusters included in this Subclass
CLUSTER: HE.7.7