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Information on SUBCLASS 7.8.1
Subclass Accession number: 5942
Subclass: 7.8.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 39.3 +/- 32.7
Average RMSD (Å) : 0.300 +/- 0.110

Consensus geometry
d (Å): 17 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: ppGphXcXXhh
(φψ)-conformation: aalpbppbwbb
Pattern: [ALMP][DEY][aeks][LM][FLV][ENR][des][G][KNQR][FY][AK][HKNS][ITV][PQ][IVY][IL][ilv][G][DNV][NQ]
Conservation:-0.997-0.541-1.2320.607-0.396-0.229-1.0442.224-0.2421.523-0.312-0.462-0.1980.228-0.1640.450-0.6862.224-1.0360.282
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1crl_*_3191crl   -319338MYALVREGKYANIPVIIGDQHHHHHHTT-S----EEEEEEaaaaaaavxbxxbwbbbbbx
1ea5_A_3051ea5   A305324LESMLNSGNFKKTQILLGVNHHHHHHHT-S--S-EEEEEEaaaaaaavxbxbbbbbbbbb
1gz7_A_3191gz7   A319338MYALVRDGKYAHVPVIIGDQHHHHHHTT-S----EEEEEEaaaaaaavxbxxbwbbbbbx
1llf_A_3191llf   A319338MYKLVRDGKYASVPVIIGDQHHHHHHTT-S----EEEEEEaaaaaaavxbxxbwbbbbbx
1p0i_A_3031p0i   A303322PDILLELGQFKKTQILVGVNHHHHHHTT-S--S-EEEEEEaaaaaaavxbxxbxbbbbbb
1thg_*_3321thg   -332351AYELFRSGRYAKVPYISGNQHHHHHHTT-S----EEEEEEaaaaaaavxbxxbwbbbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ea5_A_3051ea5   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 318
1gz7_A_3191gz7   A     GOLGLYCEROL Y - 328
1gz7_A_3191gz7   A     GOLGLYCEROL A - 329
1gz7_A_3191gz7   A     GOLGLYCEROL H - 330
1gz7_A_3191gz7   A     GOLGLYCEROL V - 331
1p0i_A_3031p0i   A     SULSULFATE ANION T - 315
1p0i_A_3031p0i   A     SULSULFATE ANION Q - 316
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gz7_A_3191gz7   A AC9GOL BINDING SITE FOR CHAIN AA - 329
1gz7_A_3191gz7   A AC9GOL BINDING SITE FOR CHAIN AH - 330

Clusters included in this Subclass
CLUSTER: HE.8.15