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Information on SUBCLASS 8.4.1
Subclass Accession number: 5968
Subclass: 8.4.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 15.5 +/- 15.0
Average RMSD (Å) : 1.417 +/- 0.445

Consensus geometry
d (Å): 17 delta (°): 135-180 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhchphpXXhXh
(φψ)-conformation: aalpbbabppbb
Pattern: [EKNRSY][acvy][ltv][ACKT][agklv][ILM][AIK][eknq][klmt][EL][DEKT][gkqs][AILMY][GNQ][fimvy][DEKQS][FILMP][DKPRT][AGKRST][ADGKT][FP]x[IKL]x[FIKV]
Conservation:-0.487-0.561-0.157-0.117-1.6492.557-0.7020.022-0.8041.3520.776-0.8660.0931.981-0.5261.077-0.189-0.323-0.603-0.7790.544-0.2080.941-1.4550.083
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ais_A_731ais   A78102RAVAKLAQKLKSIGVKFKRAPQIDVHHHHHHHHHHHHTT---SSS-EEEEaaaaaaaaaaaaagxbbabxpxbbx
1e4f_T_531e4f   T5983SVNTLLKELEEQLQKSLRSDFVISFHHHHHHHHHHHHHTS---S-EEEEEaaaaaaaaaaaaalbxbaxxxbbbb
1e5d_A_3501e5d   A350374ESTKVLAEWLTGMGFDMPATPVKVKHHHHHHHHHHHHTT-B--S--EEEEaaaaaaaaaaaaavxxbabxpxbbx
1kkh_A_791kkh   A80104YCLCAIKNTLDYLNIEPKTGFKINIHHHHHHHHHHHHTT----S-EEEEEaaaaaaaaaaaaalbbwabxbbbbb
1mp9_A_771mp9   A82106KAVKRIIKTLKKYGMQLTGKPKIQIHHHHHHHHHHHHTT---SS--EEEEaaaaaaaaaaaaagxbbabxxxbbx
1pie_A_1011pie   A102126NYVKGMIVMLKGAGYEIDKGFELLIHHHHHHHHHHHHTT----S-EEEEEaaaaaaaaaaaaavxbxabxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ais_A_731ais   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE Q - 103
1ais_A_731ais   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE N - 104
1ais_A_731ais   A     5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE V - 106
1e5d_A_3501e5d   A     FMNFLAVIN MONONUCLEOTIDE E - 350
1e5d_A_3501e5d   A     FMNFLAVIN MONONUCLEOTIDE V - 373
1e5d_A_3501e5d   A     FMNFLAVIN MONONUCLEOTIDE K - 374

Clusters included in this Subclass
CLUSTER: HE.8.14