ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.1.35

Subclass Accession number: 4382
Subclass: 1.1.35

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 33.3 +/- 31.9
Average RMSD (Å) : 0.500 +/- 0.271

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 45-90

rho (°): 45-90

Consensus Sequence:	hXhXX
(φψ)-conformation:	aapaa

Pattern:	[HL]	x	[QT]	[FLW]	[FKR]	[AGW]	[D]	[KLM]	[AL]	[CI]	[AT]	[AGSV]	x	[GT]	x	[FHRY]	[EFM]	[HT]
Conservation:	0.296	-0.689	0.205	0.387	-0.724	-0.667	3.184	-0.347	-0.213	0.326	0.261	-1.030	0.662	0.150	-1.323	-0.344	-0.904	0.770

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fs7_A_376	1fs7	A	388	405	HAQWRADMAIAGHGSFFH	HHHHHHHHHHSSTTHHHH	aaaaaaaaaaaxaaaaaa
1gu6_A_364	1gu6	A	376	393	HAQWRWDLAIASHGIHMH	HHHHHHHHHHSSTTHHHH	aaaaaaaaaaaxaaaaaa
1n5u_A_66	1n5u	A	66	83	LHTLFGDKLCTVATLRET	HHHHHHHHHHT-TTHHHH	aaaaaaaaaaaxaaaaaa
1qdb_A_386	1qdb	A	394	411	HGQFKADMAIAAHGNYFH	HHHHHHHHHHHSTTHHHH	aaaaaaaaaaabaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fs7_A_376	1fs7	A	CACALCIUM ION	W - 391
1fs7_A_376	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 398
1fs7_A_376	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 399
1fs7_A_376	1fs7	A	CACALCIUM ION	G - 399
1fs7_A_376	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 400
1fs7_A_376	1fs7	A	CACALCIUM ION	H - 400
1fs7_A_376	1fs7	A	ACTACETATE ION	H - 400
1fs7_A_376	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 401
1fs7_A_376	1fs7	A	CACALCIUM ION	G - 401
1fs7_A_376	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 402
1fs7_A_376	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 403
1fs7_A_376	1fs7	A	CACALCIUM ION	F - 403
1fs7_A_376	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 404
1fs7_A_376	1fs7	A	CACALCIUM ION	F - 404
1fs7_A_376	1fs7	A	ACTACETATE ION	F - 404
1fs7_A_376	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 405
1fs7_A_376	1fs7	A	CACALCIUM ION	H - 405
1fs7_A_376	1fs7	A	ACTACETATE ION	H - 405
1gu6_A_364	1gu6	A	CACALCIUM ION	W - 379
1gu6_A_364	1gu6	A	GOLGLYCEROL	L - 383
1gu6_A_364	1gu6	A	HECHEME C	A - 386
1gu6_A_364	1gu6	A	HECHEME C	S - 387
1gu6_A_364	1gu6	A	CACALCIUM ION	H - 388
1gu6_A_364	1gu6	A	HECHEME C	H - 388
1gu6_A_364	1gu6	A	CACALCIUM ION	G - 389
1gu6_A_364	1gu6	A	HECHEME C	G - 389
1gu6_A_364	1gu6	A	CACALCIUM ION	H - 391
1gu6_A_364	1gu6	A	HECHEME C	H - 391
1gu6_A_364	1gu6	A	CACALCIUM ION	M - 392
1gu6_A_364	1gu6	A	HECHEME C	M - 392
1gu6_A_364	1gu6	A	CACALCIUM ION	H - 393
1gu6_A_364	1gu6	A	HECHEME C	H - 393
1n5u_A_66	1n5u	A	MYRMYRISTIC ACID	L - 66
1n5u_A_66	1n5u	A	MYRMYRISTIC ACID	F - 70
1qdb_A_386	1qdb	A	CACALCIUM ION	F - 397
1qdb_A_386	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 404
1qdb_A_386	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 405
1qdb_A_386	1qdb	A	CACALCIUM ION	H - 406
1qdb_A_386	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 406
1qdb_A_386	1qdb	A	CACALCIUM ION	G - 407
1qdb_A_386	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 407
1qdb_A_386	1qdb	A	CACALCIUM ION	Y - 409
1qdb_A_386	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 409
1qdb_A_386	1qdb	A	CACALCIUM ION	F - 410
1qdb_A_386	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 410
1qdb_A_386	1qdb	A	CACALCIUM ION	H - 411
1qdb_A_386	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 411

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gu6_A_364	1gu6	A	HA4HEC BINDING SITE FOR CHAIN A	H - 388
1gu6_A_364	1gu6	A	HA4HEC BINDING SITE FOR CHAIN A	H - 391
1gu6_A_364	1gu6	A	HA4HEC BINDING SITE FOR CHAIN A	M - 392
1gu6_A_364	1gu6	A	HA4HEC BINDING SITE FOR CHAIN A	H - 393

Clusters included in this Subclass

CLUSTER: HH.3.217