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Information on SUBCLASS 1.2.3
Subclass Accession number: 8825
Subclass: 1.2.3 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 34

Average sequence ID (%) : 14.4 +/- 16.5
Average RMSD (Å) : 0.521 +/- 0.204

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XpXXp
(φψ)-conformation: aabaa
Pattern: xxx[adeknrst]x[dkpqrs][aeknqrst]xxx
Conservation:-0.681-0.174-0.5290.4190.0902.5860.243-0.598-0.584-0.774
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a53_*_2341a53   -235244SLMRNPEKIKHHHH-TTHHHaaaabaaaaa
1a88_A_1391a88   A148157ALAANRAQFYHHHH-HHHHHaaaabaaaaa
1aqu_A_1931aqu   A195204DMKEDIRREVHHHH-HHHHHaaaabaaaaa
1aup_*_331aup   -3544VVDAHPEYEEHHHH-HHHHHaaaabaaaaa
1bol_A_721bol   A7685IKSKDSSLYNHHHH-HHHHHaaaabaaaaa
1cvl_*_2371cvl   -237246ANVTDPSTLAHHHH-THHHHaaaabaaaaa
1dmt_A_4841dmt   A484493DIVSNDNKLNHHHH-HHHHHaaaabaaaaa
1e39_A_4231e39   A425434VRKSLSKIDKHHHH-THHHHaaaabaaaaa
1fs7_A_761fs7   A7685MLKEKPALVVHHHH-THHHHaaaabaaaaa
1fxx_A_3271fxx   A336345ILRENPQVREHHHH-THHHHaaaabaaaaa
1h5y_A_1071h5y   A108117AAVRNPQLVAHHHH-THHHHaaaabaaaaa
1ho8_A_1111ho8   A116125FFQEDPKQLEHHHH-TTHHHaaaabaaaaa
1ho8_A_4141ho8   A430439VVELLPESIDHHHH-TTHHHaaaabaaaaa
1i1n_A_1121i1n   A122131VRKDDPTLLSHHHH-THHHHaaaabaaaaa
1ift_*_1611ift   -177186EAARFQYIEGHHHHBHHHHHaaaabaaaaa
1izo_A_2471izo   A257266ALHEHPKYKEHHHHSTHHHHaaaabaaaaa
1j8f_A_1211j8f   A123132YFKKHPEPFFHHHH--HHHHaaaabaaaaa
1jln_A_2721jln   A277286DVVASSHLLQHHHHTTTHHHaaaabaaaaa
1jqo_A_7941jqo   A801810AIDKDVRNFQHHHH-TTHHHaaaabaaaaa
1ka9_F_1051ka9   F106115AAVRRPELIRHHHH-THHHHaaaabaaaaa
1kep_A_881kep   A9099NSLNDPSPFIHHHH--HHHHaaaabaaaaa
1kew_A_861kew   A8897RSITGPAAFIHHHH-THHHHaaaabaaaaa
1lt8_A_481lt8   A4857AAVEHPEAVRHHHH-HHHHHaaaabaaaaa
1og5_A_2131og5   A215224VYNNFPALLDHHHH-TTHHHaaaabaaaaa
1orr_A_861orr   A8897TSIDNPCMDFHHHH-HHHHHaaaabaaaaa
1q1a_A_691q1a   A7180FFQSDPLPFYHHHH--HHHHaaaabaaaaa
1qci_A_1601qci   A176185EAARFKYIENHHHH-HHHHHaaaabaaaaa
1qdb_A_751qdb   A7584MLAKDPALVIHHHH-THHHHaaaabwaaaa
1qo2_A_1031qo2   A104113KVLEDPSFLKHHHH-TTHHHaaaabaaaaa
1t7p_A_5451t7p   A555564FLENTPAIAAHHHHSTHHHHaaaabaaaaa
1thf_D_1041thf   D105114AAVENPSLITHHHH-THHHHaaaabaaaaa
1uek_A_2031uek   A206215AFRLFPELKEHHHH-THHHHaaaabaaaaa
2mas_A_1302mas   A135144AARLEPRIVDHHHH-THHHHaaaabaaaaa
3gcb_*_1683gcb   -168177YSTTASRKWNHHHHB-HHHHaaaabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a53_*_2341a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE S - 234
1a53_*_2341a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE S - 235
1aqu_A_1931aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Y - 193
1aqu_A_1931aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE K - 197
1cvl_*_2371cvl   *     CACALCIUM ION D - 241
1cvl_*_2371cvl   *     CACALCIUM ION S - 243
1cvl_*_2371cvl   *     CACALCIUM ION T - 244
1e39_A_4231e39   A     HECHEME C K - 431
1e39_A_4231e39   A     HECHEME C D - 433
1e39_A_4231e39   A     HECHEME C K - 434
1e39_A_4231e39   A     HECHEME C Y - 435
1e39_A_4231e39   A     HECHEME C G - 437
1e39_A_4231e39   A     HECHEME C L - 438
1h5y_A_1071h5y   A     PO4PHOSPHATE ION T - 107
1h5y_A_1071h5y   A     PO4PHOSPHATE ION A - 108
1i1n_A_1121i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 114
1izo_A_2471izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 247
1izo_A_2471izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 248
1izo_A_2471izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 250
1kep_A_881kep   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE N - 88
1kep_A_881kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 100
1kep_A_881kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 101
1kew_A_861kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE V - 86
1kew_A_861kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE D - 87
1kew_A_861kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 99
1kew_A_861kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 100
1og5_A_2131og5   A     SWFS-WARFARIN I - 213
1og5_A_2131og5   A     SWFS-WARFARIN Q - 214
1og5_A_2131og5   A     SWFS-WARFARIN N - 217
1orr_A_861orr   A     CDPCYTIDINE-5'-DIPHOSPHATE M - 86
1orr_A_861orr   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 99
1qci_A_1601qci   A     ADEADENINE I - 171
1qci_A_1601qci   A     ADEADENINE S - 175
1qci_A_1601qci   A     ADEADENINE E - 176
1qci_A_1601qci   A     ADEADENINE R - 179
1thf_D_1041thf   D     PO4PHOSPHATE ION T - 104
1thf_D_1041thf   D     PO4PHOSPHATE ION A - 105
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1cvl_*_2371cvl   * CACA BINDING SITE.D - 241
1ift_*_1611ift   * ACTACTIVE SITE RESIDUES OF RICIN A-CHAIN.E - 177
1ift_*_1611ift   * ACTACTIVE SITE RESIDUES OF RICIN A-CHAIN.R - 180
1og5_A_2131og5   A AC3SWF BINDING SITE FOR CHAIN AN - 217

Clusters included in this Subclass
CLUSTER: HH.1.39
CLUSTER: HH.1.47
CLUSTER: HH.2.115
CLUSTER: HH.2.19
CLUSTER: HH.2.84
CLUSTER: HH.3.17
CLUSTER: HH.3.27