ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 14.1.1

Subclass Accession number: 9248
Subclass: 14.1.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 66.7 +/- -17.1
Average RMSD (Å) : 0.100 +/- 0.000

Consensus geometry

d (Å): 27

delta (°): 90-135

theta (°): 45-90

rho (°): 180-225

Consensus Sequence:	hWXGYhFSpDYNXPRGHh
(φψ)-conformation:	aaplbaaaabbbppbpaa

Pattern:	[AR]	[L]	[V]	[IV]	[AL]	[W]	[AS]	[G]	[Y]	[AP]	[F]	[S]	[KR]	[D]	[Y]	[N]	[AKS]	[P]	[R]	[G]	[H]	[AY]	[FY]	[A]	[LV]	[QT]	[D]	[NV]	x	[EN]
Conservation:	-1.081	-0.135	-0.135	-0.336	-1.169	2.776	-0.741	0.696	1.112	-0.716	0.696	-0.135	-0.340	0.696	1.112	0.696	-1.198	1.112	0.280	0.696	1.528	-1.012	0.197	-0.135	-0.755	-0.959	0.696	-1.340	-1.476	-0.632

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1fs7_A_82	1fs7	A	82	111	ALVVAWAGYPFSKDYNAPRGHYYALQDNIN	HHHHHTTTSGGGT--B----GGGHHHHHHH	aaaaaapvbaaaabbbxxbpaaaaaaaaaa
1gu6_A_74	1gu6	A	74	103	RLVILWAGYPFSRDYNKPRGHAFAVTDVRE	HHHHHTTTSGGGT--B----GGGHHHHHHH	aaaaaapvbaaaabbbxpbpaaaaaaaaaa
1qdb_A_81	1qdb	A	81	110	ALVIAWSGYAFSKDYNSPRGHYYALQDNVN	HHHHHTTTSGGGT--B----GGGHHHHHHH	aaaaaaxvbaaaabbbxxbpaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 92
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 95
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 96
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	N - 97
1fs7_A_82	1fs7	A	CACALCIUM ION	N - 97
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 98
1fs7_A_82	1fs7	A	CACALCIUM ION	A - 98
1fs7_A_82	1fs7	A	Y1YTTRIUM ION	A - 98
1fs7_A_82	1fs7	A	ACTACETATE ION	A - 98
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	P - 99
1fs7_A_82	1fs7	A	CACALCIUM ION	P - 99
1fs7_A_82	1fs7	A	Y1YTTRIUM ION	P - 99
1fs7_A_82	1fs7	A	ACTACETATE ION	P - 99
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 100
1fs7_A_82	1fs7	A	CACALCIUM ION	R - 100
1fs7_A_82	1fs7	A	Y1YTTRIUM ION	R - 100
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 101
1fs7_A_82	1fs7	A	CACALCIUM ION	G - 101
1fs7_A_82	1fs7	A	Y1YTTRIUM ION	G - 101
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 102
1fs7_A_82	1fs7	A	CACALCIUM ION	H - 102
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 103
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 104
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 105
1fs7_A_82	1fs7	A	CACALCIUM ION	A - 105
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 106
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 108
1fs7_A_82	1fs7	A	CACALCIUM ION	D - 108
1fs7_A_82	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	N - 109
1fs7_A_82	1fs7	A	CACALCIUM ION	N - 109
1gu6_A_74	1gu6	A	HECHEME C	F - 84
1gu6_A_74	1gu6	A	HECHEME C	D - 87
1gu6_A_74	1gu6	A	HECHEME C	Y - 88
1gu6_A_74	1gu6	A	CACALCIUM ION	N - 89
1gu6_A_74	1gu6	A	HECHEME C	N - 89
1gu6_A_74	1gu6	A	CACALCIUM ION	K - 90
1gu6_A_74	1gu6	A	HECHEME C	K - 90
1gu6_A_74	1gu6	A	CACALCIUM ION	P - 91
1gu6_A_74	1gu6	A	HECHEME C	P - 91
1gu6_A_74	1gu6	A	CACALCIUM ION	R - 92
1gu6_A_74	1gu6	A	HECHEME C	R - 92
1gu6_A_74	1gu6	A	CACALCIUM ION	G - 93
1gu6_A_74	1gu6	A	HECHEME C	G - 93
1gu6_A_74	1gu6	A	CACALCIUM ION	H - 94
1gu6_A_74	1gu6	A	HECHEME C	H - 94
1gu6_A_74	1gu6	A	HECHEME C	A - 95
1gu6_A_74	1gu6	A	HECHEME C	F - 96
1gu6_A_74	1gu6	A	CACALCIUM ION	A - 97
1gu6_A_74	1gu6	A	HECHEME C	A - 97
1gu6_A_74	1gu6	A	HECHEME C	V - 98
1gu6_A_74	1gu6	A	CACALCIUM ION	D - 100
1gu6_A_74	1gu6	A	HECHEME C	D - 100
1gu6_A_74	1gu6	A	CACALCIUM ION	V - 101
1gu6_A_74	1gu6	A	HECHEME C	V - 101
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 91
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 94
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 95
1qdb_A_81	1qdb	A	CACALCIUM ION	N - 96
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	N - 96
1qdb_A_81	1qdb	A	CACALCIUM ION	S - 97
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 97
1qdb_A_81	1qdb	A	CACALCIUM ION	P - 98
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	P - 98
1qdb_A_81	1qdb	A	CACALCIUM ION	R - 99
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	R - 99
1qdb_A_81	1qdb	A	CACALCIUM ION	G - 100
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 100
1qdb_A_81	1qdb	A	CACALCIUM ION	H - 101
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 101
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 102
1qdb_A_81	1qdb	A	CACALCIUM ION	A - 104
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 104
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 105
1qdb_A_81	1qdb	A	CACALCIUM ION	D - 107
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	D - 107
1qdb_A_81	1qdb	A	CACALCIUM ION	N - 108
1qdb_A_81	1qdb	A	HEMPROTOPORPHYRIN IX CONTAINING FE	N - 108

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gu6_A_74	1gu6	A	HA1HEC BINDING SITE FOR CHAIN A	Y - 88
1gu6_A_74	1gu6	A	HA1HEC BINDING SITE FOR CHAIN A	N - 89
1gu6_A_74	1gu6	A	CA2CA BINDING SITE FOR CHAIN A	P - 91
1gu6_A_74	1gu6	A	HA3HEC BINDING SITE FOR CHAIN A	R - 92
1gu6_A_74	1gu6	A	HA3HEC BINDING SITE FOR CHAIN A	G - 93
1gu6_A_74	1gu6	A	HA3HEC BINDING SITE FOR CHAIN A	H - 94
1gu6_A_74	1gu6	A	HA3HEC BINDING SITE FOR CHAIN A	F - 96
1gu6_A_74	1gu6	A	HA3HEC BINDING SITE FOR CHAIN A	A - 97

Clusters included in this Subclass

CLUSTER: HH.17.8