Information on SUBCLASS 2.1.13 |
Subclass Accession number: 2172
Subclass: 2.1.13 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.15 (>75 %) 1.15.1 (>75 %) 1.15.1.1 (>75 %) GO : GO:0004784 (>75 %) GO:0016721 (>75 %) SCOP : 54718 (>75 %) 54719 (>75 %) 54720 (>75 %) |
Number of loops: 8 Average sequence ID (%) : 15.4 +/- 18.2 Average RMSD (Å) : 0.613 +/- 0.275 Consensus geometry
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Consensus Sequence: | XhhcXp |
(φψ)-conformation: | aappaa |
Pattern: | x | x | x | x | x | [ay] | [flmv] | [DNP] | [afgikt] | [DEKQR] | x | [ILMT] | x |
Conservation: | -0.664 | -0.517 | -0.292 | -0.852 | -0.597 | 1.014 | 0.308 | 1.993 | -1.149 | 1.017 | -0.716 | 1.242 | -0.786 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dpe_*_279 | 1dpe | - | 283 | 295 | QALTYAVNKDAII | HHHHHTS-HHHHH | aaaaaaxxaaaaa |
1jet_A_287 | 1jet | A | 291 | 303 | TALKLALDRDIIV | HHHHHHS-HHHHH | aaaaaaxxaaaaa |
1jv1_A_27 | 1jv1 | A | 34 | 46 | YAELQAMNFEELN | HHHHHT--HHHHH | aaaaaaxbaaaaa |
1mkm_A_63 | 1mkm | A | 69 | 81 | SFVLRRFNIRDIA | HHHHHH--HHHHH | aaaaaaxbaaaaa |
1rh1_A_386 | 1rh1 | A | 393 | 405 | VNAWKAFNAEDMG | HHHHHH--HHHHH | aaaaaapxaaaaa |
1uiu_A_263 | 1uiu | A | 267 | 279 | EALNYAVNKKSLI | HHHHHH--HHHHH | aaaaaaxxaaaaa |
1v33_A_260 | 1v33 | A | 273 | 285 | RFSKSYFDGRVTV | HHHHTSS-HHHHH | aaaaaabxaaaaa |
2lig_A_146 | 2lig | A | 146 | 158 | MDAYFAQPTQGMQ | HHHHHHS-HHHHH | aaaaaaxxaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dpe_*_279 | 1dpe | * | CDCADMIUM ION | Y - 287 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | L - 64 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | I - 65 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | Y - 67 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | G - 68 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | S - 69 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | L - 72 |
2lig_A_146 | 2lig | A | PHN1,10-PHENANTHROLINE | Y - 176 |
Clusters included in this Subclass |
CLUSTER: HH.2.135 |
CLUSTER: HH.2.174 |
CLUSTER: HH.3.191 |
CLUSTER: HH.3.209 |