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Information on SUBCLASS 2.1.7
Subclass Accession number: 2166
Subclass: 2.1.7 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 9.3 +/- 12.3
Average RMSD (Å) : 0.535 +/- 0.141

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpXpXX
(φψ)-conformation: aappaa
Pattern: xx[adegkrs]xx[degnpst]x[adeqst]xx
Conservation:-0.854-0.6500.6600.0990.7222.038-0.8820.549-0.498-1.184
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bf6_A_921bf6   A92101HVATRSVQELHHHHS-HHHHaaaaxxaaaa
1cex_*_1211cex   -129138SIEDLDSAIRHHHHS-HHHHaaaaxpaaaa
1dfm_A_111dfm   A1120ADEILNPQLWHHHHS-HHHHaaaaxxaaaa
1di1_A_1011di1   A117126VLEHMSFADGHHHHS-HHHHaaaabpaaaa
1fxx_A_2691fxx   A270279PLLELDSDTLHHHHS-HHHHaaaaxxaaaa
1i4m_A_1941i4m   A194203KGENFTETDVHHHH--HHHHaaaaxbaaaa
1i5p_A_251i5p   A2534SFEHKSLDTIHHHHS-HHHHaaaaxxaaaa
1i5z_A_1111i5z   A133142NLAFLDVTGRHHHHS-HHHHaaaabxaaaa
1j20_A_2731j20   A286295ESLTLDREVLHHHHS-HHHHaaaaxxaaaa
1k92_A_2941k92   A307316LTGIHNEDTIHHHHS-HHHHaaaabxaaaa
1n00_A_661n00   A7079LDKELSNDFEHHHHS-HHHHaaaaxxaaaa
1n1c_A_1451n1c   A146155LCCHSENSVQHHHHS-HHHHaaaabxaaaa
1otv_A_1191otv   A131140FARRACWQEAHHHHS-HHHHaaaaxpaaaa
1p4c_A_81p4c   A1524AQKRLPKMVYHHHHS-HHHHaaaaxxaaaa
1pk5_A_4321pk5   A435444IISHTEVAFNHHHTS-HHHHaaaabxaaaa
1rtw_A_1591rtw   A175184LAEKHGEFEKHHHTS-HHHHaaaabxaaaa
2dpm_A_1082dpm   A108117RIDMMSEVQRHHHHS-HHHHaaaaxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bf6_A_921bf6   A     GOLGLYCEROL H - 92
1bf6_A_921bf6   A     GOLGLYCEROL R - 96
1bf6_A_921bf6   A     GOLGLYCEROL E - 104
1dfm_A_111dfm   A     MSESELENOMETHIONINE E - 25
1dfm_A_111dfm   A     MSESELENOMETHIONINE T - 26
1dfm_A_111dfm   A     CACALCIUM ION T - 26
1dfm_A_111dfm   A     MSESELENOMETHIONINE L - 27
1dfm_A_111dfm   A     CACALCIUM ION L - 27
1dfm_A_111dfm   A     MSESELENOMETHIONINE L - 28
1dfm_A_111dfm   A     CACALCIUM ION L - 28
1i5z_A_1111i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE R - 123
1i5z_A_1111i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE L - 124
1i5z_A_1111i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE Q - 125
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 126
1i5z_A_1111i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE T - 127
1i5z_A_1111i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE S - 128
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 129
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL K - 130
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 131
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 133
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL L - 134
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL L - 137
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL G - 141
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL R - 142
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL I - 143
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL A - 144
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Q - 145
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL T - 146
1i5z_A_1111i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 149
1j20_A_2731j20   A     AS1ARGININOSUCCINATE Y - 310
1n1c_A_1451n1c   A     MSESELENOMETHIONINE H - 145
1n1c_A_1451n1c   A     MSESELENOMETHIONINE L - 146
1n1c_A_1451n1c   A     MSESELENOMETHIONINE C - 147
1n1c_A_1451n1c   A     MSESELENOMETHIONINE C - 148
1n1c_A_1451n1c   A     MSESELENOMETHIONINE V - 154
1n1c_A_1451n1c   A     MSESELENOMETHIONINE Q - 155
1n1c_A_1451n1c   A     MSESELENOMETHIONINE L - 156
1n1c_A_1451n1c   A     MSESELENOMETHIONINE F - 158
1n1c_A_1451n1c   A     MSESELENOMETHIONINE L - 159
1n1c_A_1451n1c   A     MSESELENOMETHIONINE C - 162
1p4c_A_81p4c   A     FMNFLAVIN MONONUCLEOTIDE Y - 26
1p4c_A_81p4c   A     FMNFLAVIN MONONUCLEOTIDE L - 27
1p4c_A_81p4c   A     FMNFLAVIN MONONUCLEOTIDE E - 28
1rtw_A_1591rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE F - 161
1rtw_A_1591rtw   A     MSESELENOMETHIONINE Y - 164
1rtw_A_1591rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE Y - 164
1rtw_A_1591rtw   A     MSESELENOMETHIONINE E - 169
1rtw_A_1591rtw   A     MSESELENOMETHIONINE N - 173
1rtw_A_1591rtw   A     MSESELENOMETHIONINE E - 177
1rtw_A_1591rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE F - 197
1rtw_A_1591rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE E - 198
1rtw_A_1591rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE F - 201
2dpm_A_1082dpm   A     HGMERCURY (II) ION I - 121
2dpm_A_1082dpm   A     HGMERCURY (II) ION L - 122
2dpm_A_1082dpm   A     HGMERCURY (II) ION L - 125

Clusters included in this Subclass
CLUSTER: HH.2.45
CLUSTER: HH.3.46