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Information on SUBCLASS 2.2.9
Subclass Accession number: 4570
Subclass: 2.2.9 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 9.9 +/- 12.2
Average RMSD (Å) : 0.679 +/- 0.229

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXpXX
(φψ)-conformation: aalpaa
Pattern: xxx[afilmv]xx[EGNRS][deknt]xxx[afgilv]x
Conservation:-0.895-0.531-0.2771.1280.5120.0581.5202.061-0.789-0.755-0.972-0.383-0.679
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b2v_A_1311b2v   A136148VYGLMSGDTGALEHHHHHTT--HHHHaaaaaavbaaaaa
1cuk_*_951cuk   -99111VNAVEREEVGALVHHHHHTT-HHHHHaaaaaalbaaaaa
1f6y_A_131f6y   A1628KRAIQERDPAPVQHHHHHHT-HHHHHaaaaaalbwaaaa
1g5a_A_3511g5a   A358370WNTLATREVNLLHHHHHHH---HHHHaaaaaavbaaaaa
1jcl_A_1071jcl   A107119YRALMAGNEQVGFHHHHHTT--HHHHaaaaaavbaaaaa
1knz_A_611knz   A7082IDQALNNKFGSAIHHHHHTT-THHHHaaaaaavbaaaaa
1m6k_A_1081m6k   A109121KTWMQFSVVWVSQHHHHHTT-HHHHHaaaaaalxaaaaa
1msw_D_5411msw   D545557HFSAMLRDEVGGRHHHHHHT-TTHHHaaaaaalxaaaaa
1mxs_A_2011mxs   A201213SSWIKNGDWARIEHHHHHTT-HHHHHaaaaaavxaaaaa
1nrf_A_4431nrf   A444456FSAMSSSTTWYFQHHHHHHT-HHHHHaaaaaalxaaaaa
1nxc_A_3561nxc   A361373HLSHLSGDPVFAEHHHHHH--THHHHaaaaaavxaaaaa
1pa1_A_7641pa1   A777789GAKFIMGDSSVQDHHHHHTT-TTHHHaaaaaagxaaaaa
1q7z_A_3281q7z   A331343WAEMQKGNEEIVIHHHHHTT--HHHHaaaaaavxaaaaa
1vhc_A_1891vhc   A189201KKLIQSNNWDEIGHHHHHTT-HHHHHaaaaaalxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b2v_A_1311b2v   A     CACALCIUM ION H - 133
1b2v_A_1311b2v   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 133
1b2v_A_1311b2v   A     CACALCIUM ION V - 136
1b2v_A_1311b2v   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 136
1b2v_A_1311b2v   A     CACALCIUM ION Y - 137
1b2v_A_1311b2v   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 137
1b2v_A_1311b2v   A     CACALCIUM ION M - 140
1b2v_A_1311b2v   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 140
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID W - 111
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID M - 112
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID F - 114
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL F - 114
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 115
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL S - 115
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 116
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID V - 117
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL V - 117
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL W - 118
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID S - 120
1m6k_A_1081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID Q - 121
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL E - 122
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL I - 123
1m6k_A_1081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL K - 126

Clusters included in this Subclass
CLUSTER: HH.3.94
CLUSTER: HH.4.99
CLUSTER: HH.5.125