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Information on SUBCLASS 2.6.1
Subclass Accession number: 2249
Subclass: 2.6.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 23.8 +/- 20.6
Average RMSD (Å) : 0.546 +/- 0.240

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: pXGGhX
(φψ)-conformation: aageaa
Pattern: x[filvy][aegkqrs]xx[G][AG][ilmptv][adepqst][aegkqrt][afilmv]x
Conservation:-0.683-0.097-0.204-0.381-0.6252.3951.754-0.450-0.285-0.516-0.161-0.747
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bjn_A_2431bjn   A255266WLKANGGVAEMDHHHHTTHHHHHHaaaaageaaaaa
1bue_A_1321bue   A139150LERYIGGPEGMTHHHTT-HHHHHHaaaaaveaaaaa
1dja_*_1321dja   -138149IIKEIGGIKKVKHHHHHT-HHHHHaaaaageaaaaa
1e25_A_1321e25   A138149LFELVGGPAALHHHHHHTHHHHHHaaaaageaaaaa
1m32_A_2451m32   A257268ELAKEGGVAARHHHHHHTHHHHHHaaaaageaaaaa
1m3q_A_2041m3q   A215226ILEEQGGLAWLQHHHTS-SHHHHHaaaaageaaaaa
1o7e_B_1321o7e   B138149LFGVVGGPPAVTHHHHHTSHHHHHaaaaageaaaaa
1ojj_A_3211ojj   A322333KYMELGATQGMGHHHHTTHHHHHHaaaaaNeaaaaa
1pq1_A_1791pq1   A181192WIQENGGWDTFVHHHHTTHHHHHHaaaaaveaaaaa
1q2b_A_3421q2b   A342353SFSDKGGLTQFKHHHHTTHHHHHHaaaaageaaaaa
1s3e_A_1821s3e   A188199YVKQCGGTTRIIHHHTTT-HHHHHaaaaageaaaaa
7req_A_4077req   A426437EVEKVGGMAKAIHHHHTT-HHHHHaaaaageaaaaa
7req_B_4037req   B422433EVEKLGGMSKAVHHHHTT-HHHHHaaaaageaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1m32_A_2451m32   A     MSESELENOMETHIONINE H - 246
1m32_A_2451m32   A     MSESELENOMETHIONINE T - 247
1m32_A_2451m32   A     MSESELENOMETHIONINE L - 249
1m32_A_2451m32   A     MSESELENOMETHIONINE A - 250
1m32_A_2451m32   A     MSESELENOMETHIONINE V - 264
1m32_A_2451m32   A     MSESELENOMETHIONINE S - 277
1m32_A_2451m32   A     MSESELENOMETHIONINE L - 278
1m32_A_2451m32   A     MSESELENOMETHIONINE V - 279
1m32_A_2451m32   A     MSESELENOMETHIONINE A - 280
1o7e_B_1321o7e   B     GOLGLYCEROL N - 132
1o7e_B_1321o7e   B     GOLGLYCEROL R - 153
1o7e_B_1321o7e   B     GOLGLYCEROL A - 154
1o7e_B_1321o7e   B     GOLGLYCEROL S - 155
1s3e_A_1821s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL Y - 188
1s3e_A_1821s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL I - 198
1s3e_A_1821s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL I - 199
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7e_B_1321o7e   B AC1GOL BINDING SITE FOR CHAIN AA - 154
1o7e_B_1321o7e   B AC2GOL BINDING SITE FOR CHAIN BS - 155

Clusters included in this Subclass
CLUSTER: HH.1.58
CLUSTER: HH.2.61
CLUSTER: HH.3.69
CLUSTER: HH.4.207