Logo
Information on SUBCLASS 3.3.1
Subclass Accession number: 8980
Subclass: 3.3.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 38

Average sequence ID (%) : 13.3 +/- 16.3
Average RMSD (Å) : 0.724 +/- 0.227

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 225-270
Consensus Sequence: XXchpXp
(φψ)-conformation: aalppaa
Pattern: xx[afgiklmtv][adeknqrst]x[adgknq]x[deknpst]x[adeknqrs][adekqrt][acfilmvwy]
Conservation:-0.488-0.580-0.9420.036-0.8642.121-0.5711.136-1.2900.6360.7760.029
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1afw_A_1861afw   A193204VAANFKISRKDQHHHHTT--HHHHaaaaalxxaaaa
1aog_A_4341aog   A443454ICLKLNAKISDFHHHHTT-BHHHHaaaaavxbaaaa
1b4u_A_791b4u   A8192AMIDEGGNVYFLHHHHTT--HHHHaaaaagxbaaaa
1bgx_T_6281bgx   T630641RVFQEGRDIHTEHHHHHT--HHHHaaaaavbxaaaa
1c30_A_4861c30   A491502QLKRKGFADARLHHHHTT--HHHHaaaaavxxaaaa
1cli_A_2781cli   A283294LQTAGNVEHHEMHHHHHT--HHHHaaaaavxxaaaa
1d2z_A_821d2z   A90101WGGQYNHTVQTLHHHHH--BHHHHaaaaalxxaaaa
1dc1_A_691dc1   A7283LLYASGISDKAKHHHHTT--HHHHaaaaavbxaaaa
1dfo_A_3671dfo   A368379AITRRGFKEAEAHHHHTT--HHHHaaaaagxbaaaa
1dmh_A_281dmh   A4455AIEDLNITSDEYHHHHTT--HHHHaaaaalxxaaaa
1dnp_A_381dnp   A4051QWATHNMSPRQAHHHHTT--HHHHaaaaavpxaaaa
1e8c_A_3051e8c   A317328TLLALGYPLADLHHHHTT--HHHHaaaaavxxaaaa
1ebd_A_4191ebd   A428439LAIEAGMTAEDIHHHHHT-BHHHHaaaaavxxaaaa
1ez4_A_2111ez4   A214225VAKEQGVSDDDLHHHHTT--HHHHaaaaavbxaaaa
1fec_A_4331fec   A442453ICLKMGAKISDFHHHHTT-BHHHHaaaaavpbaaaa
1fs7_A_2871fs7   A287298IHGQKGVSCADCHHHHTT--HHHHaaaaavxxaaaa
1gvh_A_751gvh   A8495KHTSFQIKPEQYHHHHTT--HHHHaaaaalxbaaaa
1h6v_A_4451h6v   A454465AALKCGLTKQQLHHHHTT-BHHHHaaaaavpbaaaa
1hn0_A_5881hn0   A594605YLAISDKTQNESHHHHHT--HHHHaaaaavbxaaaa
1irx_A_4651irx   A475486VAKRRGISSREWHHHHHT--HHHHaaaaavbxaaaa
1j09_A_2531j09   A255266WYKAEGFLPEALHHHHTT--HHHHaaaaavxxaaaa
1j36_A_2861j36   A288299EMEKQAYTPLKMHHHHTT--HHHHaaaaavxbaaaa
1j6u_A_2641j6u   A276287LFDSLGYDLAPVHHHHTT--HHHHaaaaavxxaaaa
1jeh_A_4301jeh   A439450LALEYGASAEDVHHHHTT-BHHHHaaaaavxxaaaa
1kv5_A_961kv5   A98109RRAYYGETNEIVHHHHS---HHHHaaaaavxxaaaa
1l3s_A_6691l3s   A673684EAFRRDLDIHTKHHHHTT--HHHHaaaaalxxaaaa
1lvl_*_4131lvl   -419430QSLEMGACLEDVHHHHHT-BHHHHaaaaavxbaaaa
1m3k_A_1571m3k   A164175VAKQWQLSRDEQHHHHTT--HHHHaaaaalbxaaaa
1m6j_A_1031m6j   A105116RRQIFHESNEQVHHHHS---HHHHaaaaalxxaaaa
1m7s_A_4841m7s   A490501VAEVAKGDLSKVHHHHTT--HHHHaaaaavxxaaaa
1mo9_A_4751mo9   A483494VLIKQGLTVDELHHHHTT-BHHHHaaaaagpbaaaa
1n55_A_961n55   A98109RRTYYGETDEIVHHHHS---HHHHaaaaavxxaaaa
1nhp_*_4001nhp   -406417LAIQAKMTIEDLHHHHTT-BHHHHaaaaavxbaaaa
1onf_A_4571onf   A466477VALKMNATKKDFHHHHTT-BHHHHaaaaalpbaaaa
1oyn_A_1311oyn   A131142LLKTFKIPVDTLHHHHTT--HHHHaaaaalxxaaaa
2btm_A_952btm   A97108RRQMFAETDETVHHHHS---HHHHaaaaavxbaaaa
3grs_*_4403grs   -449460VAVKMGATKADFHHHHTT-BHHHHaaaaavxbaaaa
3lad_A_4233lad   A432443IAMEFGTSAEDLHHHHHT-BHHHHaaaaagpbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1afw_A_1861afw   A     MPD2-METHYL-2,4-PENTANEDIOL M - 186
1b4u_A_791b4u   A     FEFE (III) ION Y - 90
1b4u_A_791b4u   A     DHB3,4-DIHYDROXYBENZOIC ACID Y - 90
1dc1_A_691dc1   A     DIO1,4-DIETHYLENE DIOXIDE S - 76
1dc1_A_691dc1   A     DIO1,4-DIETHYLENE DIOXIDE I - 78
1dc1_A_691dc1   A     DIO1,4-DIETHYLENE DIOXIDE K - 81
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE R - 29
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE V - 30
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE I - 33
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE I - 34
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE V - 37
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 41
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE I - 45
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE I - 50
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE D - 53
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE E - 54
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Y - 55
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 57
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 58
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE V - 59
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Y - 61
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 62
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Q - 64
1dmh_A_281dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 65
1dnp_A_381dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID Q - 40
1dnp_A_381dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID T - 43
1dnp_A_381dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID H - 44
1e8c_A_3051e8c   A     MSESELENOMETHIONINE A - 305
1e8c_A_3051e8c   A     MSESELENOMETHIONINE F - 306
1e8c_A_3051e8c   A     MSESELENOMETHIONINE N - 307
1e8c_A_3051e8c   A     MSESELENOMETHIONINE V - 308
1e8c_A_3051e8c   A     MSESELENOMETHIONINE S - 309
1e8c_A_3051e8c   A     MSESELENOMETHIONINE L - 312
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 287
1fs7_A_2871fs7   A     CACALCIUM ION I - 287
1fs7_A_2871fs7   A     ACTACETATE ION I - 287
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 288
1fs7_A_2871fs7   A     CACALCIUM ION H - 288
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 289
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 291
1fs7_A_2871fs7   A     CACALCIUM ION K - 291
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 293
1fs7_A_2871fs7   A     CACALCIUM ION V - 293
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 294
1fs7_A_2871fs7   A     CACALCIUM ION S - 294
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 295
1fs7_A_2871fs7   A     CACALCIUM ION C - 295
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 296
1fs7_A_2871fs7   A     CACALCIUM ION A - 296
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 297
1fs7_A_2871fs7   A     CACALCIUM ION D - 297
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 298
1fs7_A_2871fs7   A     CACALCIUM ION C - 298
1fs7_A_2871fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 299
1fs7_A_2871fs7   A     CACALCIUM ION H - 299
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 80
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 81
1gvh_A_751gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 84
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 84
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 85
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 88
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 90
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 91
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 94
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 95
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 96
1gvh_A_751gvh   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 98
1j6u_A_2641j6u   A     MSESELENOMETHIONINE N - 266
1j6u_A_2641j6u   A     MSESELENOMETHIONINE V - 267
1j6u_A_2641j6u   A     MSESELENOMETHIONINE N - 269
1j6u_A_2641j6u   A     MSESELENOMETHIONINE A - 270
1j6u_A_2641j6u   A     MSESELENOMETHIONINE V - 273
1j6u_A_2641j6u   A     MSESELENOMETHIONINE F - 277
1j6u_A_2641j6u   A     MSESELENOMETHIONINE L - 291
1kv5_A_961kv5   A     PGA2-PHOSPHOGLYCOLIC ACID E - 97
1m3k_A_1571m3k   A     GOLGLYCEROL M - 157
1m3k_A_1571m3k   A     GOLGLYCEROL G - 158
1mo9_A_4751mo9   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 475
1n55_A_961n55   A     GOLGLYCEROL R - 98
1n55_A_961n55   A     GOLGLYCEROL C - 117
2btm_A_952btm   A     PGA2-PHOSPHOGLYCOLIC ACID E - 96
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvh_A_751gvh   A AC2HEM BINDING SITE FOR CHAIN AI - 81
1gvh_A_751gvh   A AC2HEM BINDING SITE FOR CHAIN AK - 84

Clusters included in this Subclass
CLUSTER: HH.3.10
CLUSTER: HH.4.6
CLUSTER: HH.5.3