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Information on SUBCLASS 3.5.2
Subclass Accession number: 4705
Subclass: 3.5.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 9.9 +/- 12.3
Average RMSD (Å) : 0.689 +/- 0.220

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXhppXX
(φψ)-conformation: aapabaa
Pattern: xx[adknrt][aekns][AIVW][KPQRST][DENS]x[aekqrs][adegq]xxx[AIMTV]
Conservation:-1.116-0.392-0.194-0.2130.1810.6962.959-0.7360.005-0.394-0.578-0.435-0.5990.816
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ezv_C_2761ezv   C281294ILRSIPDKLLGVITHHHTSSSHHHHHHHaaaababaaaaaaa
1fyh_A_301fyh   A3245ILKNWKEESDRKIMHHHH--SHHHHHHHaaaabaxaaaaaaa
1h97_A_1051h97   A119132FQNLVKDAEGKAAVHHHHSSSHHHHHHHaaaababaaaaaaa
1ii2_A_4751ii2   A475488PRKAWKDVRQFNETHHHH-S-HHHHHHHaaaaxabaaaaaaa
1n81_A_1161n81   A139152NVDHAREVKEKKRIHHHH-SSHHHHHHHaaaaxaxaaaaaaa
1o7e_A_241o7e   A2639AITAASDFAALEKAHHHH--SHHHHHHHaaaaxabaaaaaaa
1or4_A_1301or4   A148161YEASITNQQELLKAHHHH--SHHHHHHHaaaabaxaaaaaaa
1r3c_A_2441r3c   A246259LLKKISSESARNYIHHHH---HHHHHHHaaaaxapaaaaaaa
1v9m_A_1211v9m   A126139QAYEAQDPAGMAQVHHHHSSSHHHHHHHaaaapabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ezv_C_2761ezv   C     SMASTIGMATELLIN A F - 278
1ezv_C_2761ezv   C     SMASTIGMATELLIN A Y - 279
1ezv_C_2761ezv   C     SMASTIGMATELLIN A L - 282
1ezv_C_2761ezv   C     SMASTIGMATELLIN A M - 295
1ezv_C_2761ezv   C     SMASTIGMATELLIN A F - 296
1ezv_C_2761ezv   C     SMASTIGMATELLIN A I - 299
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 107
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 108
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 109
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 110
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 111
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 112
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 115
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 136
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 139
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 140
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 143
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 132
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 133
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 136
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 137
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 140
1or4_A_1301or4   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 172
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7e_A_241o7e   A BC2SO4 BINDING SITE FOR CHAIN AK - 38

Clusters included in this Subclass
CLUSTER: HH.2.101
CLUSTER: HH.3.136
CLUSTER: HH.4.172