Information on SUBCLASS 3.5.6 |
Subclass Accession number: 4709
Subclass: 3.5.6 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 16.4 +/- 30.4 Average RMSD (Å) : 0.620 +/- 0.130 Consensus geometry
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Consensus Sequence: | XphXpXp |
(φψ)-conformation: | aapabaa |
Pattern: | [ADES] | x | [VY] | x | [KNS] | [ILP] | [aqt] | [DNRS] | [kpt] | x | [TV] | [ALV] | [AGST] | x |
Conservation: | 0.082 | -1.032 | 2.355 | -1.153 | 1.142 | -0.282 | -0.476 | 0.082 | -1.060 | -0.380 | 1.230 | 0.200 | 0.073 | -0.782 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1g29_1_224 | 1g29 | 1 | 226 | 239 | EVYDKPANTFVAGF | HHHHS-SBHHHHHH | aaaaapabaaaaaa |
1i1w_A_93 | 1i1w | A | 93 | 106 | SWVSSITDKNTLTN | HHHHT---HHHHHH | aaaaaxabaaaaaa |
1oxx_K_225 | 1oxx | K | 227 | 240 | DLYDNPVSIQVASL | HHHHS-SSHHHHHH | aaaaaxabaaaaaa |
1qqf_A_1165 | 1qqf | A | 1178 | 1191 | ASYLNLQRPYTVAI | HHHTT---HHHHHH | aaaaaxaxaaaaaa |
1tux_*_93 | 1tux | - | 93 | 106 | SWVVSITDKNTLTN | HHHHT---HHHHHH | aaaaaxaxaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1g29_1_224 | 1g29 | 1 | MGMAGNESIUM ION | D - 225 |
1g29_1_224 | 1g29 | 1 | MGMAGNESIUM ION | Y - 228 |
1g29_1_224 | 1g29 | 1 | MGMAGNESIUM ION | D - 229 |
1i1w_A_93 | 1i1w | A | UNXUNKNOWN ATOM OR ION | K - 101 |
1i1w_A_93 | 1i1w | A | UNXUNKNOWN ATOM OR ION | K - 109 |
1i1w_A_93 | 1i1w | A | GOLGLYCEROL | N - 110 |
1i1w_A_93 | 1i1w | A | UNXUNKNOWN ATOM OR ION | T - 113 |
1i1w_A_93 | 1i1w | A | GOLGLYCEROL | T - 113 |
1i1w_A_93 | 1i1w | A | GOLGLYCEROL | T - 114 |
1i1w_A_93 | 1i1w | A | GOLGLYCEROL | T - 117 |
1i1w_A_93 | 1i1w | A | GOLGLYCEROL | R - 118 |
1i1w_A_93 | 1i1w | A | ACNACETONE | R - 118 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | P - 225 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | E - 226 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | D - 227 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | N - 231 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | V - 233 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | S - 234 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | I - 235 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | Q - 236 |
1oxx_K_225 | 1oxx | K | IODIODIDE ION | V - 237 |
Clusters included in this Subclass |
CLUSTER: HH.3.212 |
CLUSTER: HH.4.238 |
CLUSTER: HH.5.256 |