Logo
Information on SUBCLASS 3.8.3
Subclass Accession number: 4725
Subclass: 3.8.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005216 (>75 %)  GO:0005244 (>75 %)  GO:0005253 (>75 %)  GO:0005254 (>75 %)  GO:0008509 (>75 %)  GO:0015075 (>75 %)  GO:0015267 (>75 %)  GO:0015268 (>75 %)  
SCOP : 47615 (>75 %)  47616 (>75 %)  47617 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 22.2 +/- 38.5
Average RMSD (Å) : 0.800 +/- 0.216

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XpXXppX
(φψ)-conformation: aapppaa
Pattern: [ae][aet][afy]xx[hnt][cqr][kp][ds][dqs]xx[ily][egt]x
Conservation:0.546-0.3810.286-0.648-1.0480.552-0.5142.0721.9550.286-0.514-1.1810.286-0.915-0.781
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bo4_A_541bo4   A5569ATYSQHQPDSDYLGNHHHHSS---HHHHHHaaaaaaxwxaaaaaa
1k0m_A_2171k0m   A217231EEFASTCPDDEEIELHHHHTTS--HHHHHHaaaaaaxwxaaaaaa
1r4p_A_2781r4p   A281295AAAFLNRKSQFLYTTHHHHS----HHHHHHaaaaaaxxpaaaaaa
1rk4_A_2171rk4   A217231EEFASTCPDDEEIELHHHHTT---HHHHHHaaaaaaxxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bo4_A_541bo4   A     SPDSPERMIDINE Y - 57
1r4p_A_2781r4p   A     FMTFORMIC ACID S - 278
1r4p_A_2781r4p   A     FMTFORMIC ACID N - 279
1r4p_A_2781r4p   A     EDO1,2-ETHANEDIOL K - 288
1r4p_A_2781r4p   A     EDO1,2-ETHANEDIOL F - 291
1r4p_A_2781r4p   A     EDO1,2-ETHANEDIOL L - 292
1r4p_A_2781r4p   A     EDO1,2-ETHANEDIOL Y - 293
1r4p_A_2781r4p   A     FMTFORMIC ACID T - 294
1r4p_A_2781r4p   A     EDO1,2-ETHANEDIOL T - 295

Clusters included in this Subclass
CLUSTER: HH.6.139