ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 3.9.1

Subclass Accession number: 4729
Subclass: 3.9.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 26.2 +/- 33.0
Average RMSD (Å) : 0.940 +/- 0.195

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	pTXXpXX
(φψ)-conformation:	aabpbaa

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-1.382	-0.385	0.152	0.228	-0.551	2.306	-0.314	1.450	0.333	1.537	-0.897	-0.362	1.410	-0.606	0.911	-0.357	-0.828	-0.012	-1.326	-0.551	-0.757

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e3m_A_375	1e3m	A	375	395	LPELRAQLETVDSAPVQALRE	HHHHHHHHHS---HHHHHHHH	aaaaaaaaaapxbaaaaaaaa
1e3m_B_370	1e3m	B	375	395	LPELRAQLETVDSAPVQALRE	HHHHHHHHTT---HHHHHHHH	aaaaaaaaaapxbaaaaaaaa
1j37_A_26	1j37	A	43	63	ETEAAWAYRSAITDENEKKKN	HHHHHHHHTTS--HHHHHHHH	aaaaaaaaaabxbaaaaaaaa
1o8a_A_41	1o8a	A	62	82	YAEANWNYNTNITTETSKILL	HHHHHHHHHTS--HHHHHHHH	aaaaaaaaaabxbaaaaaaaa
1r42_A_23	1r42	A	43	63	SSLASWNYNTNITEENVQNMN	HHHHHHHHHHS--HHHHHHHH	aaaaaaaaaabpbaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e3m_B_370	1e3m	B	MSESELENOMETHIONINE	H - 370
1e3m_B_370	1e3m	B	MSESELENOMETHIONINE	A - 371
1e3m_B_370	1e3m	B	MSESELENOMETHIONINE	F - 372
1e3m_B_370	1e3m	B	MSESELENOMETHIONINE	Q - 373
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	L - 375
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	L - 378
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	R - 379
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	L - 382
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	V - 390
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	A - 392
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	L - 393
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	R - 394
1e3m_A_375	1e3m	A	MSESELENOMETHIONINE	E - 395
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 45
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 48
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 49
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 68
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 72
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 74
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 75
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 76
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 77
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	M - 86
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 87
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 90
1o8a_A_41	1o8a	A	NAGN-ACETYL-D-GLUCOSAMINE	K - 94
1r42_A_23	1r42	A	NAGN-ACETYL-D-GLUCOSAMINE	K - 26

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o8a_A_41	1o8a	A	NG1NAG BINDING SITE FOR CHAIN A	N - 72
1o8a_A_41	1o8a	A	NG1NAG BINDING SITE FOR CHAIN A	T - 74
1o8a_A_41	1o8a	A	NG1NAG BINDING SITE FOR CHAIN A	E - 76

Clusters included in this Subclass

CLUSTER: HH.4.160