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PDB code:

Information on SUBCLASS 4.1.2

Subclass Accession number: 4771 Subclass: 4.1.2 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 24 Average sequence ID (%) : 12.1 +/- 16.6 Average RMSD (Å) : 0.733 +/- 0.250 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1brw_A_18	1brw	A	26	42	RGYTNGDIPDYQMSALA	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1c1k_A_146	1c1k	A	149	165	KLLQSNIISFETFILLD	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1cgt_*_283	1cgt	-	291	307	NVFRDNTSNMYALDSMI	HHHTS-SS-HHHHHHHH	aaaaavabbaaaaaaaa
1ciu_*_284	1ciu	-	292	308	QVFRDNTDTMYGLDSMI	HHHTT-SS-HHHHHHHH	aaaaalabbaaaaaaaa
1dqs_A_287	1dqs	A	301	317	LARHLGILKGVAVSRIV	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1e2h_A_171	1e2h	A	175	191	ARYLMGSMTPQAVLAFV	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1e2h_A_96	1e2h	A	105	121	HRLDQGEISAGDAAVVM	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1ek9_A_360	1ek9	A	360	376	AGYSVGTRTIVDVLDAT	HHHHTTSS-HHHHHHHH	aaaaavabbaaaaaaaa
1h5r_A_254	1h5r	A	257	273	IAFRKGFIDVEQVRKLA	HHHHTTSS-HHHHHHHH	aaaaavabbaaaaaaaa
1h6k_A_121	1h6k	A	133	149	DLVNCHVIAAPSMVAMF	HHHHTTSB-HHHHHHHH	aaaaavabxaaaaaaaa
1iin_A_254	1iin	A	257	273	IAFRKNFINAQQVIELA	HHHHTTSS-HHHHHHHH	aaaaalabbaaaaaaaa
1j0h_A_377	1j0h	A	385	401	RFFAKEEISARQFANQM	HHHTS--S-HHHHHHHH	aaaaalabxaaaaaaaa
1j97_A_32	1j97	A	40	56	KEAMEGKLNFEQSLRKR	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1ji2_A_374	1ji2	A	382	398	RFFATGEIHAERFDAEL	HHHTS--S-HHHHHHHH	aaaaavabxaaaaaaaa
1kcl_A_283	1kcl	A	291	307	QVFRDNTDNMYGLKAML	HHHTS-SS-HHHHHHHH	aaaaalabbaaaaaaaa
1l8a_A_845	1l8a	A	855	871	ELAKRGEIDKKVVADAI	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1oe0_A_114	1oe0	A	117	133	NMRRNGSLEQGMYNTLE	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1p5z_B_137	1p5z	B	140	156	NLYESECMNETEWTIYQ	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1p6x_A_73	1p6x	A	82	98	NRKQQGNLAVDDAALIT	HHHHHTSS-HHHHHHHH	aaaaagabxaaaaaaaa
1pam_A_283	1pam	A	291	307	QVFRDNTDNMYGLKAML	HHHTT-SS-HHHHHHHH	aaaaalabbaaaaaaaa
1q5n_A_20	1q5n	A	37	53	AQAQVGVIPQSAATVIQ	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa
1qho_A_284	1qho	A	292	308	NVFGTFTQTMYDLNNMV	HHHTS-SS-HHHHHHHH	aaaaavabbaaaaaaaa
1uou_A_51	1uou	A	59	75	AAVVNGSAQGAQIGAML	HHHHHT-S-HHHHHHHH	aaaaagaxxaaaaaaaa
1uw4_B_865	1uw4	B	877	893	ELYNYRMVESAVIFRTL	HHHHTTSS-HHHHHHHH	aaaaavabxaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1brw_A_18	1brw	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	I - 45
1brw_A_18	1brw	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	Y - 46
1brw_A_18	1brw	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	F - 47
1brw_A_18	1brw	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	R - 48
1dqs_A_287	1dqs	A	ZNZINC ION	H - 287
1dqs_A_287	1dqs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	H - 287
1dqs_A_287	1dqs	A	CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID	H - 287
1dqs_A_287	1dqs	A	ZNZINC ION	V - 291
1dqs_A_287	1dqs	A	CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID	V - 291
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	A - 360
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	G - 361
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	Y - 362
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	S - 363
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	R - 367
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	T - 368
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	V - 370
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	D - 371
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	V - 372
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	D - 374
1ek9_A_360	1ek9	A	MSESELENOMETHIONINE	A - 375
1h5r_A_254	1h5r	A	THMTHYMIDINE	E - 256
1h5r_A_254	1h5r	A	THMTHYMIDINE	I - 257
1h5r_A_254	1h5r	A	THMTHYMIDINE	R - 260
1j97_A_32	1j97	A	BFDASPARTATE BERYLLIUM TRIFLUORIDE	M - 43
1j97_A_32	1j97	A	MGMAGNESIUM ION	M - 43
1j97_A_32	1j97	A	BFDASPARTATE BERYLLIUM TRIFLUORIDE	F - 49
1kcl_A_283	1kcl	A	GLCGLUCOSE	A - 286
1kcl_A_283	1kcl	A	GLCGLUCOSE	Q - 287
1kcl_A_283	1kcl	A	GLCGLUCOSE	R - 290
1kcl_A_283	1kcl	A	GLCGLUCOSE	Q - 291
1kcl_A_283	1kcl	A	GLCGLUCOSE	R - 294
1kcl_A_283	1kcl	A	GLCGLUCOSE	D - 295
1kcl_A_283	1kcl	A	MALMALTOSE	Y - 301
1oe0_A_114	1oe0	A	TTPTHYMIDINE-5'-TRIPHOSPHATE	F - 114
1oe0_A_114	1oe0	A	TTPTHYMIDINE-5'-TRIPHOSPHATE	V - 115
1oe0_A_114	1oe0	A	TTPTHYMIDINE-5'-TRIPHOSPHATE	M - 118
1p5z_B_137	1p5z	B	AR3CYTARABINE	F - 137
1p5z_B_137	1p5z	B	AR3CYTARABINE	A - 138
1p5z_B_137	1p5z	B	AR3CYTARABINE	L - 141
1p6x_A_73	1p6x	A	THMTHYMIDINE	I - 74
1p6x_A_73	1p6x	A	THMTHYMIDINE	I - 77
1p6x_A_73	1p6x	A	THMTHYMIDINE	Y - 78
1p6x_A_73	1p6x	A	THMTHYMIDINE	Q - 102
1p6x_A_73	1p6x	A	THMTHYMIDINE	F - 105
1p6x_A_73	1p6x	A	THMTHYMIDINE	T - 106
1p6x_A_73	1p6x	A	THMTHYMIDINE	Y - 109
1qho_A_284	1qho	A	ABDACARBOSE DERIVED HEXASACCHARIDE	T - 288
1qho_A_284	1qho	A	MALMALTOSE	Y - 302

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h5r_A_254	1h5r	A	THMTHM BINDING SITE FOR CHAIN D	E - 256

Clusters included in this Subclass

CLUSTER: HH.4.52

CLUSTER: HH.5.13

CLUSTER: HH.6.8

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