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Information on SUBCLASS 6.19.1
Subclass Accession number: 4962
Subclass: 6.19.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 16.0 +/- 19.9
Average RMSD (Å) : 0.843 +/- 0.360

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXpXXXhpXX
(φψ)-conformation: aapappbpaa
Pattern: [afiw][ekl]x[ekl][AENQS]x[egkq]x[impv][ES][agtv]x[EKQ][FILV][aklv][ERY]x
Conservation:-0.607-0.446-0.789-0.3520.496-1.134-0.301-0.9550.0321.717-0.516-0.3792.3791.075-0.4321.046-0.834
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j5y_A_51j5y   A1733ILERSKEPVSGAQLAEEHHHH-SS-B-HHHHHHHaaaaxabxbxaaaaaaa
1kqo_A_851kqo   A85101WESLQKEWKETLKVLRHHHHH-SS---HHHHHHHaaaaxaxpbxaaaaaaa
1mkm_A_41mkm   A1329FIVKNPGDVSVSEIAEKHHHH-SS-B-HHHHHHHaaaaxaxbbxaaaaaaa
1nup_A_831nup   A8399WESEQAQWMETVKVLRHHHHHSSS---HHHHHHHaaaaxabpbpaaaaaaa
1o08_A_10491o08   A10561072ILDLADKKVSAEEFKELHHTTSSS---HHHHHHHaaaabaxxxxaaaaaaa
1q44_A_2351q44   A243259AEFLECGFIEEEEVREIHHHH-SS---HHHHHHHaaaabaxxbxaaaaaaa
1vin_*_2531vin   -265281SKFEEIYPPEVAEFVYIHHHH-SS---HHHHHHHaaaaxabxxxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j5y_A_51j5y   A     MSESELENOMETHIONINE T - 5
1j5y_A_51j5y   A     MSESELENOMETHIONINE V - 6
1j5y_A_51j5y   A     MSESELENOMETHIONINE R - 7
1j5y_A_51j5y   A     MSESELENOMETHIONINE Q - 8
1kqo_A_851kqo   A     DNDNICOTINIC ACID ADENINE DINUCLEOTIDE E - 86
1kqo_A_851kqo   A     DNDNICOTINIC ACID ADENINE DINUCLEOTIDE W - 92
1kqo_A_851kqo   A     DNDNICOTINIC ACID ADENINE DINUCLEOTIDE K - 93
1kqo_A_851kqo   A     DNDNICOTINIC ACID ADENINE DINUCLEOTIDE E - 94
1kqo_A_851kqo   A     DNDNICOTINIC ACID ADENINE DINUCLEOTIDE T - 95
1kqo_A_851kqo   A     DNDNICOTINIC ACID ADENINE DINUCLEOTIDE L - 96
1kqo_A_851kqo   A     DNDNICOTINIC ACID ADENINE DINUCLEOTIDE K - 97
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE E - 84
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE W - 90
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE M - 91
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE E - 92
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE T - 93
1nup_A_831nup   A     NMNBETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE V - 94
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE R - 1049
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE S - 1052
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE K - 1076
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE N - 1077
1o08_A_10491o08   A     G16ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE Y - 1080

Clusters included in this Subclass
CLUSTER: HH.7.22