ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.8.1

Subclass Accession number: 4948
Subclass: 6.8.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 21.0 +/- 25.1
Average RMSD (Å) : 1.050 +/- 0.369

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	pXcXpXhppp
(φψ)-conformation:	aalpabppaa

Pattern:	[aiklv]	[agnr]	x	[acilv]	[adgqrs]	x	x	[ai]	x	x	x	[gkn]	[adkr]	[denrst]	x	[ilv]	[gst]	x	x	x	x	x	x	[alv]
Conservation:	0.145	0.004	-0.484	0.331	-0.581	-0.427	0.528	1.630	-0.896	-0.597	-1.229	1.356	0.005	0.036	-1.164	2.793	1.406	-0.356	-0.033	-0.516	-1.221	-0.768	-0.709	0.746

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a7w_*_5	1a7w	-	5	28	IAPIGRIIKDAGAERVSDDARITL	HHHHHHHHHHTT-S---HHHHHHH	aaaaaaaaaaagxabbxaaaaaaa
1b67_A_6	1b67	A	6	29	IAPIGRIIKNAGAERVSDDARIAL	HHHHHHHHHHTT-S---HHHHHHH	aaaaaaaaaaagxabbxaaaaaaa
1eqz_B_56	1eqz	B	74	97	AGEASRLAHYNKRSTITSREIQTA	HHHHHHHHHHTT-----HHHHHHH	aaaaaaaaaaalbabxbaaaaaaa
1g8p_A_288	1g8p	A	295	318	LRSARALAALEGATAVGRDHLKRV	HHHHHHHHHHTT-SB--HHHHHHH	aaaaaaaaaaavxabxbaaaaaaa
1ixz_A_362	1ixz	A	369	392	LNEAALLAAREGRRKITMKDLEEA	HHHHHHHHHHTT-SSB-HHHHHHH	aaaaaaaaaaavxabxxaaaaaaa
1khy_A_85	1khy	A	91	114	LNLCDKLAQKRGDNFISSELFVLA	HHHHHHHHHHHT-SSB-HHHHHHH	aaaaaaaaaaavxabxxaaaaaaa
1ku5_A_6	1ku5	A	6	29	IAPVDRLIRKAGAERVSEQAAKVL	HHHHHHHHHHTT-S---HHHHHHH	aaaaaaaaaaagxabbxaaaaaaa
1kx5_D_53	1kx5	D	71	94	AGEASRLAHYNKRSTITSREIQTA	HHHHHHHHHHTT-S---HHHHHHH	aaaaaaaaaaalbabxbaaaaaaa
1lv7_A_361	1lv7	A	368	391	VNEAALFAARGNKRVVSMVEFEKA	HHHHHHHHHHTT-SSB-HHHHHHH	aaaaaaaaaaalbabxbaaaaaaa
1ng6_A_20	1ng6	A	30	53	KASLQNEAIKLKKDSLTEDEELTV	HHHHHHHHHHTTSS---HHHHHHH	aaaaaaaaaaalbabbxaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a7w_*_5	1a7w	*	ZNZINC ION	E - 34
1a7w_*_5	1a7w	*	ZNZINC ION	M - 35
1a7w_*_5	1a7w	*	ZNZINC ION	D - 38
1ixz_A_362	1ixz	A	HGMERCURY (II) ION	G - 362
1khy_A_85	1khy	A	MSESELENOMETHIONINE	F - 111
1khy_A_85	1khy	A	MSESELENOMETHIONINE	V - 112
1khy_A_85	1khy	A	MSESELENOMETHIONINE	L - 113
1khy_A_85	1khy	A	MSESELENOMETHIONINE	A - 115
1ku5_A_6	1ku5	A	ACTACETATE ION	R - 20

Clusters included in this Subclass

CLUSTER: HH.6.37

CLUSTER: HH.7.14