ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.3.5

Subclass Accession number: 100
Subclass: 1.3.5

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.1 (>75 %)  3.1.1 (>75 %)
GO : GO:0004091 (>75 %)  GO:0016788 (>75 %)  GO:0016789 (>75 %)
SCOP : 53473 (>75 %)  53474 (>75 %)  53475 (>75 %)

Number of loops: 5

Average sequence ID (%) : 60.3 +/- 18.9
Average RMSD (Å) : 0.200 +/- 0.071

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	hFGGD
(φψ)-conformation:	aagbb

Pattern:	[ALVWY]	[G]	[HL]	[lw]	[D]	[Q]	x	[ALM]	[AG]	[ILM]	[AKQR]	[W]	[V]	[hkqr]	[DER]	[N]	[I]	[AEQS]	[afg]	[F]	[G]	[G]	[DN]	[P]	[DGKS]	[KNQST]	[IV]	[T]	[ILV]	[F]	[G]	[E]
Conservation:	-1.255	0.920	-0.888	-1.185	0.920	0.531	-1.323	-0.854	-0.458	-0.385	-0.882	2.861	0.143	-1.053	-0.642	0.920	0.143	-0.949	-1.190	0.920	0.920	0.920	0.065	1.308	-1.067	-0.991	-0.030	0.531	-0.320	0.920	0.920	0.531

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ea5_A_168	1ea5	A	168	199	VGLLDQRMALQWVHDNIQFFGGDPKTVTIFGE	HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE	aaaaaaaaaaaaaaaaaaaavxxaabbbxbbb
1llf_A_177	1llf	A	177	208	AGLKDQRLGMQWVADNIAGFGGDPSKVTIFGE	HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE	aaaaaaaaaaaaaaaaaaaagxxaaaxbxbbb
1mx1_A_1189	1mx1	A	1189	1220	WGHLDQVAALRWVQDNIASFGGNPGSVTIFGE	HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE	aaaaaaaaaaaaaaaaaaaavxbaabbbbbbb
1qe3_A_157	1qe3	A	157	188	LGLLDQAAALKWVRENISAFGGDPDNVTVFGE	HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE	aaaaaaaaaaaaaaaaaaaavbbaabbbxbbb
2bce_*_162	2bce	-	162	193	YGLWDQHMAIAWVKRNIEAFGGDPDQITLFGE	HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE	aaaaaaaaaaaaaaaaaaaagxxaaaxbxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1llf_A_177	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 179
1llf_A_177	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	K - 180
1llf_A_177	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	R - 183
1llf_A_177	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 184
1llf_A_177	1llf	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 187
1llf_A_177	1llf	A	F23TRICOSANOIC ACID	E - 208
1mx1_A_1189	1mx1	A	THATACRINE	E - 1220

Clusters included in this Subclass

CLUSTER: HE.4.102