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Information on SUBCLASS 1.2.9
Subclass Accession number: 1007
Subclass: 1.2.9 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.4 (>75 %)  2.4.1 (>75 %)  2.4.1.16.1 (>50 %)  6.1.1 (>50 %)  
GO : GO:0004645 (>75 %)  GO:0004812 (>50 %)  GO:0005489 (>75 %)  GO:0005524 (>50 %)  GO:0008452 (>50 %)  GO:0016757 (>75 %)  GO:0016758 (>75 %)  GO:0016874 (>50 %)  GO:0016875 (>50 %)  GO:0016876 (>50 %)  GO:0016886 (>50 %)  
SCOP : 52342 (>75 %)  52343 (>75 %)  52373 (>50 %)  52374 (>50 %)  52375 (>50 %)  53755 (>75 %)  53756 (>75 %)  53766 (>75 %)  
Number of loops: 7

Average sequence ID (%) : 32.7 +/- 27.0
Average RMSD (Å) : 0.400 +/- 0.224

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXGXh
(φψ)-conformation: bbeaa
Pattern: [ILTVWY][LMV][ILV][AS][AGPT][GS][ILTV][AGS]x[AGMT][PY][fmy][lm][AGPS][FILMY]
Conservation:-1.1200.8141.0020.716-0.9951.731-0.2690.588-1.598-1.0711.370-0.4420.071-0.582-0.216
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8p_*_1091a8p   -111125YMLSTGTGLAPFMSLEEEEEGGGGHHHHHHxbxbbeaaaaaaaaa
1fdr_*_1081fdr   -110124WMLATGTAIGPYLSIEEEEEGGGGHHHHHHxbbbbeaaaaaaaaa
1gvh_A_2621gvh   A263277TLISAGVGQTPMLAMEEEEEGGGGHHHHHHbbbbbeaaaaaaaaa
1imj_A_1061imj   A106120VVISPSLSGMYSLPFEEEEEGGGHHHHHHHxbxbxeaaaaaaaaa
1jb9_A_1671jb9   A169183IMIATGTGVAPFRGYEEEEEGGGGHHHHHHbbbbbeaaaaaaaaa
1krh_A_2131krh   A214228LMLAGGTGIAPFLSMEEEEEGGGHHHHHHHbbbbbeaaaaaaaaa
2pia_*_1132pia   -115129ILVAGGIGITPMLSMEEEEEGGGHHHHHHHbbbbbeaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8p_*_1091a8p   *     FADFLAVIN-ADENINE DINUCLEOTIDE T - 117
1a8p_*_1091a8p   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 120
1a8p_*_1091a8p   *     FADFLAVIN-ADENINE DINUCLEOTIDE P - 121
1fdr_*_1081fdr   *     FADFLAVIN-ADENINE DINUCLEOTIDE T - 116
1fdr_*_1081fdr   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 117
1gvh_A_2621gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 269
1gvh_A_2621gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 272
1gvh_A_2621gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 273
1jb9_A_1671jb9   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 175
1jb9_A_1671jb9   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 176
1jb9_A_1671jb9   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 178
1krh_A_2131krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 220
1krh_A_2131krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 221
1krh_A_2131krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 223
1krh_A_2131krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 224
2pia_*_1132pia   *     FMNFLAVIN MONONUCLEOTIDE I - 121
2pia_*_1132pia   *     FMNFLAVIN MONONUCLEOTIDE T - 124
2pia_*_1132pia   *     FMNFLAVIN MONONUCLEOTIDE P - 125
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvh_A_2621gvh   A AC4NA BINDING SITE FOR CHAIN AQ - 271
1gvh_A_2621gvh   A AC1FAD BINDING SITE FOR CHAIN AT - 272

Clusters included in this Subclass
CLUSTER: EH.3.101
CLUSTER: EH.5.71