ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.12

Subclass Accession number: 1052
Subclass: 2.1.12

PSSM

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 18

Average sequence ID (%) : 10.3 +/- 13.0
Average RMSD (Å) : 0.644 +/- 0.231

Consensus geometry

d (Å): 11

delta (°): 0-45

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	XhXpXX
(φψ)-conformation:	bbabaa

Pattern:	x	x	[cfilptv]	x	[DHKNST]	x	[aderst]	x	x
Conservation:	-0.211	-0.499	0.007	-0.225	2.337	-0.912	0.725	-0.403	-0.819

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f5v_A_46	1f5v	A	49	57	IRITDKALR	EE---HHHH	xxxaxaaaa
1g3p_*_163	1g3p	-	169	177	TPVSSKAMY	EE---HHHH	xpxabaaaa
1gq8_A_284	1gq8	A	285	293	KVITSSTEA	EE---HHHH	bxxabaaaa
1h1n_A_101	1h1n	A	101	109	SIISSPSDF	EE---HHHH	bpxabaaaa
1jmx_A_414	1jmx	A	418	426	VEPFNERAV	EEESSHHHH	bbpabaaaa
1jr7_A_248	1jr7	A	248	256	VQPKDFEEG	EE--SHHHH	xbpabaaaa
1kfs_A_331	1kfs	A	331	339	VTILDEETL	EE--SHHHH	xbxabaaaa
1lam_*_353	1lam	-	357	365	AATLTGAMD	EE---HHHH	bbxabaaaa
1lcy_A_286	1lcy	A	286	294	QMVQNAEDV	EE--SHHHH	bxbabaaaa
1na6_A_133	1na6	A	137	145	WVCASTDEE	EE--SHHHH	bbpabaaaa
1oey_J_294	1oey	J	295	303	VRLLSDEDV	EE--SHHHH	bxxabaaaa
1osp_O_260	1osp	O	260	268	VEITKLDEI	EE--SHHHH	bxxabaaaa
1pyf_A_93	1pyf	A	95	103	VFDNSPDFL	EE---HHHH	bxbaxaaaa
1pz1_A_94	1pz1	A	95	103	FRHANRARI	EE---HHHH	bxbapaaaa
1qcs_A_8	1qcs	A	9	17	ARCPTDELS	EE-S-HHHH	bxpabaaaa
1qgo_A_37	1qgo	A	40	48	RAFTSGMII	EEE--HHHH	bbbaxaaaa
1say_A_347	1say	A	347	354	.RLVHPAVQ	.EE--HHHH	.bxaxaaaa
1ua4_A_87	1ua4	A	89	97	LFVESCPVR	EEB--HHHH	bxxaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1lam_*_353	1lam	*	ZNZINC ION	T - 359
1lam_*_353	1lam	*	CO3CARBONATE ION	T - 359
1lam_*_353	1lam	*	ZNZINC ION	L - 360
1lam_*_353	1lam	*	CO3CARBONATE ION	L - 360
1lam_*_353	1lam	*	CO3CARBONATE ION	T - 361
1oey_J_294	1oey	J	MSESELENOMETHIONINE	L - 297
1oey_J_294	1oey	J	MSESELENOMETHIONINE	E - 301
1oey_J_294	1oey	J	MSESELENOMETHIONINE	D - 302
1oey_J_294	1oey	J	MSESELENOMETHIONINE	V - 303
1oey_J_294	1oey	J	MSESELENOMETHIONINE	A - 304
1pyf_A_93	1pyf	A	MSESELENOMETHIONINE	L - 103
1pyf_A_93	1pyf	A	MSESELENOMETHIONINE	K - 104
1pyf_A_93	1pyf	A	MSESELENOMETHIONINE	K - 105
1pyf_A_93	1pyf	A	MSESELENOMETHIONINE	V - 107
1pyf_A_93	1pyf	A	MSESELENOMETHIONINE	D - 108
1pyf_A_93	1pyf	A	MSESELENOMETHIONINE	L - 111
1pz1_A_94	1pz1	A	MSESELENOMETHIONINE	L - 94
1pz1_A_94	1pz1	A	MSESELENOMETHIONINE	I - 103
1qcs_A_8	1qcs	A	MSESELENOMETHIONINE	A - 8
1ua4_A_87	1ua4	A	GLCGLUCOSE	E - 88

Clusters included in this Subclass

CLUSTER: EH.1.137

CLUSTER: EH.2.54

CLUSTER: EH.3.146

CLUSTER: EH.3.73

CLUSTER: EH.4.44