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PDB code:

Information on SUBCLASS 2.1.13

Subclass Accession number: 1053 Subclass: 2.1.13 Type: EH beta-alpha DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 15 Average sequence ID (%) : 9.4 +/- 13.0 Average RMSD (Å) : 0.760 +/- 0.145 Consensus geometry d (Å): 7 delta (°): 0-45 theta (°): 90-135 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a9x_A_1039	1a9x	A	1040	1047	YDTTLNGG	EESSHHHH	bbabaaaa
1b24_A_34	1b24	A	41	48	TQKSENLI	EES-HHHH	bbaxaaaa
1ci9_A_329	1ci9	A	330	337	VLDDPAAA	EES-HHHH	bxabaaaa
1d2n_A_647	1d2n	A	653	660	TTSRKDVL	EES-HHHH	bbabaaaa
1e4f_T_49	1e4f	T	49	56	EIKDAIAF	EES-HHHH	bxabaaaa
1gqe_A_341	1gqe	A	341	348	ETRNTQAV	EES-HHHH	bbaxaaaa
1gvf_A_78	1gvf	A	83	90	HHESLDDI	EE--HHHH	lxabaaaa
1jf8_A_77	1jf8	A	79	86	VTLCSDAD	EE-SHHHH	bxabaaaa
1jfl_A_189	1jfl	A	191	198	IAGCTEVS	EE-SHHHH	xxabaaaa
1lrz_A_397	1lrz	A	399	406	KPINKPVY	EESSHHHH	bxabaaaa
1mgp_A_183	1mgp	A	188	195	YVSNFDYL	EES-THHH	bbabaaaa
1mjf_A_99	1mjf	A	103	110	VEIDEDVI	EES-HHHH	bbabaaaa
1mw5_A_123	1mw5	A	127	134	LPESFAAR	EESSHHHH	bxaxaaaa
1naq_A_11	1naq	A	17	24	TAPDEATA	EESSHHHH	bbabaaaa
1qgo_A_37	1qgo	A	41	48	AFTSGMII	EE--HHHH	bbaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a9x_A_1039	1a9x	A	ORNORNITHINE	H - 1039
1a9x_A_1039	1a9x	A	ORNORNITHINE	Y - 1040
1a9x_A_1039	1a9x	A	ORNORNITHINE	D - 1041
1a9x_A_1039	1a9x	A	ORNORNITHINE	T - 1042
1a9x_A_1039	1a9x	A	ORNORNITHINE	T - 1043
1a9x_A_1039	1a9x	A	ORNORNITHINE	G - 1046
1b24_A_34	1b24	A	MSESELENOMETHIONINE	V - 38
1b24_A_34	1b24	A	MSESELENOMETHIONINE	I - 40
1d2n_A_647	1d2n	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	T - 653
1d2n_A_647	1d2n	A	MGMAGNESIUM ION	T - 653
1d2n_A_647	1d2n	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	S - 655
1d2n_A_647	1d2n	A	MGMAGNESIUM ION	S - 655
1gqe_A_341	1gqe	A	MSESELENOMETHIONINE	T - 345
1gqe_A_341	1gqe	A	MSESELENOMETHIONINE	A - 347
1gqe_A_341	1gqe	A	MSESELENOMETHIONINE	V - 348
1gqe_A_341	1gqe	A	MSESELENOMETHIONINE	L - 349
1gvf_A_78	1gvf	A	EGLETHYLENE GLYCOL	A - 78
1gvf_A_78	1gvf	A	EGLETHYLENE GLYCOL	L - 79
1gvf_A_78	1gvf	A	PGCO-PHOSPHOGLYCOLOHYDROXAMATE	D - 82
1gvf_A_78	1gvf	A	ZNZINC ION	D - 82
1gvf_A_78	1gvf	A	PGCO-PHOSPHOGLYCOLOHYDROXAMATE	H - 83
1gvf_A_78	1gvf	A	ZNZINC ION	H - 83
1gvf_A_78	1gvf	A	EGLETHYLENE GLYCOL	V - 94
1gvf_A_78	1gvf	A	EGLETHYLENE GLYCOL	H - 95
1jf8_A_77	1jf8	A	BCTBICARBONATE ION	C - 82
1mgp_A_183	1mgp	A	MSESELENOMETHIONINE	F - 183
1mgp_A_183	1mgp	A	PLMPALMITIC ACID	K - 184
1mgp_A_183	1mgp	A	PLMPALMITIC ACID	A - 185
1mgp_A_183	1mgp	A	PLMPALMITIC ACID	I - 186
1mgp_A_183	1mgp	A	MSESELENOMETHIONINE	F - 187
1mgp_A_183	1mgp	A	PLMPALMITIC ACID	F - 187
1mgp_A_183	1mgp	A	PLMPALMITIC ACID	L - 195
1mw5_A_123	1mw5	A	MSESELENOMETHIONINE	Y - 124
1mw5_A_123	1mw5	A	MSESELENOMETHIONINE	L - 126
1mw5_A_123	1mw5	A	MSESELENOMETHIONINE	L - 127
1mw5_A_123	1mw5	A	MSESELENOMETHIONINE	P - 128
1mw5_A_123	1mw5	A	MSESELENOMETHIONINE	L - 137
1naq_A_11	1naq	A	HGMERCURY (II) ION	C - 16
1naq_A_11	1naq	A	MBOMERCURIBENZOIC ACID	C - 16
1naq_A_11	1naq	A	HGMERCURY (II) ION	T - 17
1naq_A_11	1naq	A	MBOMERCURIBENZOIC ACID	T - 17
1naq_A_11	1naq	A	HGMERCURY (II) ION	A - 18
1naq_A_11	1naq	A	MBOMERCURIBENZOIC ACID	A - 18
1naq_A_11	1naq	A	MBOMERCURIBENZOIC ACID	P - 19
1naq_A_11	1naq	A	MBOMERCURIBENZOIC ACID	T - 23
1naq_A_11	1naq	A	HGMERCURY (II) ION	L - 27
1naq_A_11	1naq	A	MBOMERCURIBENZOIC ACID	L - 27

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gvf_A_78	1gvf	A	AC1PGC BINDING SITE FOR CHAIN A	D - 82
1gvf_A_78	1gvf	A	AC1PGC BINDING SITE FOR CHAIN A	H - 83

Clusters included in this Subclass

CLUSTER: EH.1.96

CLUSTER: EH.2.39

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