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Information on SUBCLASS 2.2.6
Subclass Accession number: 1079
Subclass: 2.2.6 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51395 (>50 %)  51396 (>50 %)  
 Number of loops: 8

Average sequence ID (%) : 7.5 +/- 16.1
Average RMSD (Å) : 0.625 +/- 0.212

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 0-45 rho (°): 225-270
Consensus Sequence: XXhXpX
(φψ)-conformation: bbppaa
Pattern: xx[ailpv][DHPRS][dekrst][ADEGRS]x[akqr]x
Conservation:-1.452-0.481-0.0980.8790.0400.838-0.2891.684-1.121
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fr2_B_321fr2   B3240APIPDRIADEE-BHHHHHxxxpaaaaa
1itw_A_1431itw   A145153RRAPLSVKNEE--HHHHHbbxxaaaaa
1kko_A_1241kko   A124132NLLHTAVRYEE--HHHHHbpppaaaaa
1kzf_A_961kzf   A101109FFVDKARAREEE-HHHHHpbbxaaaaa
1o5z_A_891o5z   A8997EYISEEDVVEE--HHHHHbxpxaaaaa
1q5h_A_551q5h   A5967VAPRSGLAAEE--HHHHHxbxxaaaaa
1q6o_A_1321q6o   A135143YHRSRDAQAEE--HHHHHxbxpaaaaa
1six_A_571six   A6169VHPRSGLATEE--HHHHHxbxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1itw_A_1431itw   A     MNMANGANESE (II) ION R - 145
1itw_A_1431itw   A     ICIISOCITRIC ACID R - 145
1kko_A_1241kko   A     MSESELENOMETHIONINE L - 144
1kko_A_1241kko   A     MSESELENOMETHIONINE A - 145
1kko_A_1241kko   A     MSESELENOMETHIONINE S - 146
1q5h_A_551q5h   A     MGMAGNESIUM ION Y - 56
1q5h_A_551q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE V - 59
1q5h_A_551q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE P - 61
1q5h_A_551q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE R - 62
1q5h_A_551q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE S - 63
1q5h_A_551q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE G - 64
1q5h_A_551q5h   A     DUDDEOXYURIDINE-5'-DIPHOSPHATE L - 65
1q6o_A_1321q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE V - 134
1q6o_A_1321q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE H - 136
1q6o_A_1321q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 137
1q6o_A_1321q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE R - 139
1q6o_A_1321q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE Q - 142
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE P - 63
1six_A_571six   A     MGMAGNESIUM ION R - 64
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE R - 64
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE S - 65
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE G - 66
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE L - 67
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE R - 70

Clusters included in this Subclass
CLUSTER: EH.1.53