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Information on SUBCLASS 2.12.1
Subclass Accession number: 1132
Subclass: 2.12.1 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.7 (>75 %)  2.7.1 (>75 %)  3.5 (>75 %)  3.5.1 (>75 %)  3.5.1.26
GO : GO:0004798 (>75 %)  GO:0016301 (>75 %)  GO:0016772 (>75 %)  GO:0016773 (>75 %)  GO:0016776 (>75 %)  GO:0019205 (>75 %)  
SCOP : 52539 (>75 %)  52540 (>75 %)  52541 (>75 %)  56234 (>75 %)  56235 (>75 %)  56261 (>75 %)  56800 (>75 %)  56801 (>75 %)  56802 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 30.8 +/- 22.4
Average RMSD (Å) : 0.375 +/- 0.050

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 0-45 rho (°): 90-135
Consensus Sequence: hpRpXh
(φψ)-conformation: bbebaa
Pattern: [LVW][KLV][FI][FGLM][DE][R][HSY]x[AFLY][S][ADNT][AQR][AY]
Conservation:-0.553-0.7170.391-1.1381.2532.122-0.292-0.558-0.7031.427-0.790-0.303-0.138
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gsi_A_901gsi   A90102VVILDRYVASNAAEEEEES-HHHHHHbbbbxebaaaaaa
1oe0_A_1001oe0   A100112LKIMERSIFSARYEEEEES-HHHHHHbbbbxebaaaaaa
1p5z_B_1231p5z   B123135VLFFERSVYSDRYEEEEES-HHHHHHbbbxxebaaaaaa
4tmk_A_954tmk   A95107WVIGDRHDLSTQAEEEEE--HHHHHHxbbbbebaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE D - 94
1gsi_A_901gsi   A     MGMAGNESIUM ION R - 95
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE R - 95
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE Y - 96
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE V - 97
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE S - 99
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE N - 100
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE A - 101
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE Y - 103
1gsi_A_901gsi   A     TMPTHYMIDINE-5'-PHOSPHATE S - 104
1oe0_A_1001oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE E - 104
1oe0_A_1001oe0   A     MGMAGNESIUM ION E - 104
1oe0_A_1001oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE R - 105
1oe0_A_1001oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE S - 106
1oe0_A_1001oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE S - 109
1oe0_A_1001oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE A - 110
1oe0_A_1001oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE R - 111
1p5z_B_1231p5z   B     MO3MAGNESIUM ION, 3 WATERS COORDINATED E - 127
1p5z_B_1231p5z   B     AR3CYTARABINE E - 127
1p5z_B_1231p5z   B     ADPADENOSINE-5'-DIPHOSPHATE E - 127
1p5z_B_1231p5z   B     MO3MAGNESIUM ION, 3 WATERS COORDINATED R - 128
1p5z_B_1231p5z   B     AR3CYTARABINE R - 128
1p5z_B_1231p5z   B     ADPADENOSINE-5'-DIPHOSPHATE R - 128
1p5z_B_1231p5z   B     AR3CYTARABINE S - 132
1p5z_B_1231p5z   B     AR3CYTARABINE D - 133
1p5z_B_1231p5z   B     AR3CYTARABINE R - 134
4tmk_A_954tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE D - 99
4tmk_A_954tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE R - 100
4tmk_A_954tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE H - 101
4tmk_A_954tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE D - 102
4tmk_A_954tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE S - 104
4tmk_A_954tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 105
4tmk_A_954tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE Q - 106
4tmk_A_954tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE Y - 108
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gsi_A_901gsi   A AC2TMP BINDING SITE FOR CHAIN AR - 95
1gsi_A_901gsi   A AC2TMP BINDING SITE FOR CHAIN AN - 100
1gsi_A_901gsi   A AC2TMP BINDING SITE FOR CHAIN AY - 103
1oe0_A_1001oe0   A AC1TTP BINDING SITE FOR CHAIN AE - 104
1oe0_A_1001oe0   A AC1TTP BINDING SITE FOR CHAIN AR - 105

Clusters included in this Subclass
CLUSTER: EH.2.143