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Information on SUBCLASS 2.1.8
Subclass Accession number: 114
Subclass: 2.1.8 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51734 (>75 %)  51735 (>75 %)  51800 (>75 %)  
 Number of loops: 6

Average sequence ID (%) : 18.8 +/- 18.1
Average RMSD (Å) : 0.767 +/- 0.186

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXcXXG
(φψ)-conformation: aalpbe
Pattern: [giv]xx[AIV]x[aflmw]x[aqr][ALV][AEGQ][FHK][aily][ALM][AFGKL][DEQW]x[GKQ]x[egrs][G][afklt]x
Conservation:-0.269-0.742-0.8601.040-0.419-0.499-0.4640.0150.4030.0270.428-0.4670.521-0.7870.390-0.6090.752-0.708-0.5443.596-0.803-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_A_8031a9x   A805826IQDVMRQQVQKLAFELQVRGLMHHHHHHHHHHHHHHHTT--EEEaaaaaaaaaaaaaaaalxbexb
1gr0_A_3121gr0   A316336GVIIDAVRAAKIAKDRGIGGP.HHHHHHHHHHHHHHHTT--EE.aaaaaaaaaaaaaaaavbxex.
1mka_A_791mka   A82103GLDAMWQLVGFYLGWLGGEGKGHHHHHHHHHHHHHHHTT--SEEaaaaaaaaaaaaaaaavxbexx
1q2y_A_821q2y   A82103VGGIIMKALEKAAADGGASGFIHHHHHHHHHHHHHHHTT--SEEaaaaaaaaaaaaaaaavxbebb
1vjp_A_3161vjp   A322342GLLVDLVRLGKIALDRKEFGT.HHHHHHHHHHHHHHHTT--EE.aaaaaaaaaaaaaaaalxxeb.
2dap_*_2702dap   -276297SSQIAFGRAAHRMKQQGQSGAFHHHHHHHHHHHHHHHTS--EEEaaaaaaaaaaaaaaaavbbexb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_A_8031a9x   A     PO4PHOSPHATE ION Q - 803
1a9x_A_8031a9x   A     PO4PHOSPHATE ION Q - 806
1a9x_A_8031a9x   A     MNMANGANESE (II) ION N - 827
1a9x_A_8031a9x   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 829
1a9x_A_8031a9x   A     MNMANGANESE (II) ION Q - 829
1a9x_A_8031a9x   A     ADPADENOSINE-5'-DIPHOSPHATE A - 831
1gr0_A_3121gr0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 312
1gr0_A_3121gr0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 313
1gr0_A_3121gr0   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 314
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE G - 79
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE D - 84
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE W - 87
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE Q - 88
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE V - 90
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE G - 91
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE F - 92
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE G - 103
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE R - 104
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE A - 105
1mka_A_791mka   A     DAC2-DECENOYL N-ACETYL CYSTEAMINE L - 106
1vjp_A_3161vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 316
1vjp_A_3161vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 317
1vjp_A_3161vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 319
1vjp_A_3161vjp   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 320
2dap_*_2702dap   *     API2,6-DIAMINOPIMELIC ACID N - 270
2dap_*_2702dap   *     API2,6-DIAMINOPIMELIC ACID T - 274
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1mka_A_791mka   A AC2TWO POLAR RESIDUES ARE FOUND IN THE CATALYTIC REGION OF THE ACTIVE SITE.D - 84

Clusters included in this Subclass
CLUSTER: HE.4.106
CLUSTER: HE.5.86