Information on SUBCLASS 2.1.9 |
Subclass Accession number: 115
Subclass: 2.1.9 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 7.8 +/- 9.0 Average RMSD (Å) : 0.925 +/- 0.206 Consensus geometry
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Consensus Sequence: | hXXhpX |
(φψ)-conformation: | aalppb |
Pattern: | x | x | x | x | x | [LV] | x | [PTV] | x | x | [LVW] | [DEHK] | x | [NQT] | x |
Conservation: | -0.407 | -1.177 | -0.561 | -0.869 | -1.100 | 2.408 | -0.022 | 0.759 | -1.100 | 0.739 | 0.346 | 0.747 | -0.638 | 0.972 | -0.099 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dfm_A_50 | 1dfm | A | 56 | 70 | YIKDELVPKHWKNNI | HHHHHHGGGT-EEEE | aaaaaaaaavxxblx |
1f1u_A_28 | 1f1u | A | 31 | 45 | SREFYVDVLGLHVTE | HHHHHTTTT--EEEE | aaaaaaaaavxxxab |
1g5t_A_72 | 1g5t | A | 72 | 86 | GERNLLEPHGVEFQV | HHHHHHGGGT-EEEE | aaaaaaaaavxxbbb |
1h70_A_28 | 1h70 | A | 37 | 51 | AYIRALQTCDVDITL | HHHHHHTTSS-EEEE | aaaaaaaaalbxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | G - 52 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | T - 53 |
1dfm_A_50 | 1dfm | A | CACALCIUM ION | N - 54 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | Y - 56 |
1dfm_A_50 | 1dfm | A | CACALCIUM ION | Y - 56 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | I - 57 |
1dfm_A_50 | 1dfm | A | MSESELENOMETHIONINE | P - 71 |
1g5t_A_72 | 1g5t | A | ATPADENOSINE-5'-TRIPHOSPHATE | G - 72 |
1g5t_A_72 | 1g5t | A | ATPADENOSINE-5'-TRIPHOSPHATE | E - 73 |
Clusters included in this Subclass |
CLUSTER: HE.5.182 |
CLUSTER: HE.6.105 |