Logo
Information on SUBCLASS 2.1.9
Subclass Accession number: 115
Subclass: 2.1.9 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 7.8 +/- 9.0
Average RMSD (Å) : 0.925 +/- 0.206

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hXXhpX
(φψ)-conformation: aalppb
Pattern: xxxxx[LV]x[PTV]xx[LVW][DEHK]x[NQT]x
Conservation:-0.407-1.177-0.561-0.869-1.1002.408-0.0220.759-1.1000.7390.3460.747-0.6380.972-0.099
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dfm_A_501dfm   A5670YIKDELVPKHWKNNIHHHHHHGGGT-EEEEaaaaaaaaavxxblx
1f1u_A_281f1u   A3145SREFYVDVLGLHVTEHHHHHTTTT--EEEEaaaaaaaaavxxxab
1g5t_A_721g5t   A7286GERNLLEPHGVEFQVHHHHHHGGGT-EEEEaaaaaaaaavxxbbb
1h70_A_281h70   A3751AYIRALQTCDVDITLHHHHHHTTSS-EEEEaaaaaaaaalbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dfm_A_501dfm   A     MSESELENOMETHIONINE G - 52
1dfm_A_501dfm   A     MSESELENOMETHIONINE T - 53
1dfm_A_501dfm   A     CACALCIUM ION N - 54
1dfm_A_501dfm   A     MSESELENOMETHIONINE Y - 56
1dfm_A_501dfm   A     CACALCIUM ION Y - 56
1dfm_A_501dfm   A     MSESELENOMETHIONINE I - 57
1dfm_A_501dfm   A     MSESELENOMETHIONINE P - 71
1g5t_A_721g5t   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 72
1g5t_A_721g5t   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 73

Clusters included in this Subclass
CLUSTER: HE.5.182
CLUSTER: HE.6.105