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Information on SUBCLASS 3.4.2
Subclass Accession number: 1158
Subclass: 3.4.2 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 9.3 +/- 11.1
Average RMSD (Å) : 0.713 +/- 0.220

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: hXcXpXX
(φψ)-conformation: bblppaa
Pattern: x[ACGILPVW][afgiklv]x[adgnr]x[deknrsty]x[ekqrsw]x[AFGIKLMV]x[adeknqrs][afiklt][cfikltv]
Conservation:-0.4820.521-0.691-1.7001.617-0.855-0.286-1.070-0.338-0.0471.236-0.6611.5780.2060.971
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d02_A_1771d02   A179193MWRPNESGEKLVQHFEE-TT--HHHHHHHHxxxpvxxaaaaaaaa
1e79_A_2001e79   A203217YVAIGQKRSTVAQLVEEEES--HHHHHHHHbbxbvxxaaaaaaaa
1e79_D_1801e79   D183197FAGVGERTREGNDLYEEEESS-HHHHHHHHbbxblbxaaaaaaaa
1f08_A_1891f08   A194208LAVFGLAEVFFEASFEEEES--HHHHHHHHbbbbvxxaaaaaaaa
1gve_A_1331gve   A136150LGLSNYVSWEVAEICEEEES--HHHHHHHHxbbbvxxaaaaaaaa
1m1n_B_4201m1n   B420434TVYIGKDLWHLRSLVEEEES--HHHHHHHHbbbbvbbaaaaaaaa
1m3u_A_1771m3u   A178192LVLECVPVELAKRITEEEES--HHHHHHHHbxbblbxaaaaaaaa
1m72_A_991m72   A101115TVFPNLKSEEINKFIEEEES--HHHHHHHHbbbxlxxaaaaaaaa
1moq_*_5161moq   -516530VIVVAPNNELLEKLKEEEES--HHHHHHHHbbbblxxaaaaaaaa
1nw9_B_1991nw9   B202216EVKGDLTAKKMVLALEEEES--HHHHHHHHbbbblbxaaaaaaaa
1pdo_*_871pdo   -88102EVIAGVNIPMLVETLEEEES--HHHHHHHHbbbxvpbaaaaaaaa
1pyo_A_731pyo   A7690HVLCDQTAQEMQEKLEEEES--HHHHHHHHbbbblbxaaaaaaaa
1qtn_A_2801qtn   A282296KPHDDCTVEQIYEILEEEES--HHHHHHHHbwbxlbxaaaaaaaa
1rlh_A_741rlh   A7791ILIRNAYPINILNAVEEEES--HHHHHHHHbbbbvbxaaaaaaaa
1su4_A_6751su4   A675688.CFARVEPSHKSKIV.EEES--HHHHHHHH.bbblbxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e79_D_1801e79   D     MGMAGNESIUM ION E - 188
1e79_D_1801e79   D     ADPADENOSINE-5'-DIPHOSPHATE E - 188
1e79_D_1801e79   D     MGMAGNESIUM ION R - 189
1e79_D_1801e79   D     ADPADENOSINE-5'-DIPHOSPHATE R - 189
1e79_D_1801e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE R - 191
1e79_D_1801e79   D     MGMAGNESIUM ION E - 192
1e79_D_1801e79   D     ADPADENOSINE-5'-DIPHOSPHATE E - 192
1e79_D_1801e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE E - 192
1e79_D_1801e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE N - 194
1e79_D_1801e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE D - 195
1e79_D_1801e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE L - 196
1e79_D_1801e79   D     GLHN-5-CYCLOHEXYL-N-5-[(CYCLOHEXYLAMINO)CARBONYL]GLUTAMINE Y - 197
1e79_A_2001e79   A     MGMAGNESIUM ION Y - 203
1e79_A_2001e79   A     MGMAGNESIUM ION Q - 208
1gve_A_1331gve   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 139
1gve_A_1331gve   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE N - 140
1gve_A_1331gve   A     CITCITRIC ACID N - 140
1gve_A_1331gve   A     GOLGLYCEROL V - 142
1gve_A_1331gve   A     GOLGLYCEROL W - 144
1gve_A_1331gve   A     GOLGLYCEROL E - 145
1gve_A_1331gve   A     GOLGLYCEROL E - 148
1m3u_A_1771m3u   A     KPLKETOPANTOATE V - 179
1m3u_A_1771m3u   A     KPLKETOPANTOATE E - 181
1moq_*_5161moq   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID A - 520
1moq_*_5161moq   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID P - 521
1moq_*_5161moq   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 522
1qtn_A_2801qtn   A     DTDDITHIANE DIOL T - 288
1qtn_A_2801qtn   A     DTDDITHIANE DIOL E - 290
1qtn_A_2801qtn   A     DTDDITHIANE DIOL Q - 291
1qtn_A_2801qtn   A     DTDDITHIANE DIOL E - 294
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e79_D_1801e79   D CATTHE CARBOXYLATE GROUP OF THE GLUTAMIC ACID RESIDUE IS BELIEVED TO ACTIVATE A WATER MOLECULE FOR INLINE ATTACK ON THE GAMMA PHOSPHATE DURING ATP HYDROLYSIS. THE ARGININE RESIDUE (WHICH IS LOCATED ON A ADJACENT ALPHA SUBUNIT) COULD HELP TO STABLIZE THE NEGATIVE CHARGE THAT DEVELOPS ON THE TERMINAL PHOSPHATE IN THE PUTATIVE PENTACOORDINATED TRANSITION STATE.E - 188
1gve_A_1331gve   A AC1NAP BINDING SITE FOR CHAIN AS - 139
1gve_A_1331gve   A AC1NAP BINDING SITE FOR CHAIN AN - 140
1gve_A_1331gve   A AC7GOL BINDING SITE FOR CHAIN AE - 145
1gve_A_1331gve   A AC7GOL BINDING SITE FOR CHAIN AE - 148

Clusters included in this Subclass
CLUSTER: EH.3.47
CLUSTER: EH.4.16