ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.4.3

Subclass Accession number: 1159
Subclass: 3.4.3

PSSM

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0003676 (>75 %)

Number of loops: 9

Average sequence ID (%) : 10.2 +/- 13.7
Average RMSD (Å) : 0.544 +/- 0.213

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hXchXXX
(φψ)-conformation:	bblppaa

Pattern:	[AFILPVY]	x	x	[DHKN]	[ALMPTV]	[dpstv]	x	x	x	[afil]	x	[aekq]
Conservation:	0.219	-0.699	-0.613	2.827	0.254	-0.330	-0.202	-1.020	-0.423	-0.214	-0.446	0.647

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aua_*_209	1aua	-	213	224	YIINAPFGFSTA	EEES--HHHHHH	bbblxxaaaaaa
1ic6_A_2	1ic6	A	2	13	AQTNAPWGLARI	EETT--HHHHHH	bbxlxwaaaaaa
1ii2_A_4	1ii2	A	5	16	IHRNLLSPELVQ	EEES--HHHHHH	xbblxxaaaaaa
1j3b_A_15	1j3b	A	15	26	VFWNTVSPVLVE	EEES--HHHHHH	bbxlpxaaaaaa
1kaf_A_159	1kaf	A	163	174	FGYKMMEHHIQK	EEES--HHHHHH	bbblxxaaaaaa
1m1n_A_399	1m1n	A	400	411	LYDDVTGYEFEE	EEES-BHHHHHH	bbblpxaaaaaa
1os1_A_22	1os1	A	23	34	IVYNPSYDLLYQ	EEES--HHHHHH	bbxlxxaaaaaa
1r6l_A_171	1r6l	A	172	183	PVLDLDYLEDSA	EEES--HHHHHH	wbxvxxaaaaaa
1rku_A_165	1rku	A	167	178	ILFHAPENVIRE	EEES--HHHHHH	bxblxxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	M - 209
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	G - 210
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	K - 211
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	F - 212
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	I - 214
1aua_*_209	1aua	*	BOGB-OCTYLGLUCOSIDE	F - 221
1ic6_A_2	1ic6	A	CACALCIUM ION	R - 12
1j3b_A_15	1j3b	A	PO4PHOSPHATE ION	T - 19
1j3b_A_15	1j3b	A	PO4PHOSPHATE ION	V - 20
1j3b_A_15	1j3b	A	PO4PHOSPHATE ION	S - 21
1j3b_A_15	1j3b	A	PO4PHOSPHATE ION	P - 22
1r6l_A_171	1r6l	A	MSESELENOMETHIONINE	V - 171
1r6l_A_171	1r6l	A	MSESELENOMETHIONINE	P - 172
1r6l_A_171	1r6l	A	MSESELENOMETHIONINE	V - 173
1r6l_A_171	1r6l	A	MSESELENOMETHIONINE	L - 174
1rku_A_165	1rku	A	MGMAGNESIUM ION	F - 169
1rku_A_165	1rku	A	MGMAGNESIUM ION	H - 170
1rku_A_165	1rku	A	MGMAGNESIUM ION	A - 171
1rku_A_165	1rku	A	MGMAGNESIUM ION	P - 172

Clusters included in this Subclass

CLUSTER: EH.2.132

CLUSTER: EH.4.45