ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.5.4

Subclass Accession number: 1165
Subclass: 3.5.4

PSSM

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0008761 (>50 %) GO:0016853 (>50 %) GO:0016854 (>50 %) GO:0016857 (>50 %)
SCOP : 53755 (>50 %) 53756 (>50 %) 53763 (>50 %)

Number of loops: 8

Average sequence ID (%) : 9.1 +/- 12.4
Average RMSD (Å) : 0.713 +/- 0.230

Consensus geometry

d (Å): 15

delta (°): 0-45

theta (°): 90-135

rho (°): 45-90

Consensus Sequence:	XXXXphX
(φψ)-conformation:	bbpbpaa

Pattern:	x	x	[IKLV]	x	x	[gnrst]	x	[adent]	[EKQTWY]	x	x
Conservation:	-0.354	-1.077	1.843	-0.717	0.069	0.755	-1.685	0.224	1.128	0.067	-0.253

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gxq_A_151	1gxq	A	151	161	EPLEMGPTEFK	EE----HHHHH	xxbbbxaaaaa
1ii7_A_138	1ii7	A	142	152	GMKYMSSAWFE	EE----HHHHH	ebxpbxaaaaa
1kag_A_99	1kag	A	101	111	VYLETTIEKQL	EE----HHHHH	bxxxbxaaaaa
1kk8_A_410	1kk8	A	410	420	VTKGQNMNQVV	EE----HHHHH	bxbbxbaaaaa
1kq6_A_37	1kq6	A	38	48	KVVYRRFTEIY	EE----HHHHH	bxbbbxaaaaa
1p99_A_277	1p99	A	277	287	KPVNLSKDEIK	EE----HHHHH	bxbbxxaaaaa
1s7j_A_121	1s7j	A	121	131	ERIPILPEYEA	EE----HHHHH	xpbxxxaaaaa
1uok_*_292	1uok	-	295	305	DVKPCSLLTLK	EE----HHHHH	xxbxbxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ii7_A_138	1ii7	A	MNMANGANESE (II) ION	Y - 145
1kq6_A_37	1kq6	A	GOLGLYCEROL	E - 37
1kq6_A_37	1kq6	A	GOLGLYCEROL	K - 38
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	V - 39
1kq6_A_37	1kq6	A	GOLGLYCEROL	V - 39
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	V - 40
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	Y - 41
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	R - 42
1kq6_A_37	1kq6	A	SULSULFATE ANION	R - 43
1kq6_A_37	1kq6	A	SULSULFATE ANION	F - 44
1kq6_A_37	1kq6	A	SULSULFATE ANION	T - 45
1kq6_A_37	1kq6	A	SULSULFATE ANION	E - 46
1kq6_A_37	1kq6	A	SULSULFATE ANION	Y - 48
1kq6_A_37	1kq6	A	SULSULFATE ANION	H - 51
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	K - 52
1kq6_A_37	1kq6	A	SULSULFATE ANION	K - 52
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	T - 53
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	L - 54
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	K - 55
1kq6_A_37	1kq6	A	SULSULFATE ANION	K - 55

Clusters included in this Subclass

CLUSTER: EH.3.201

CLUSTER: EH.4.248

CLUSTER: EH.4.270

CLUSTER: EH.5.145