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Information on SUBCLASS 2.2.1
Subclass Accession number: 121
Subclass: 2.2.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 58

Average sequence ID (%) : 15.4 +/- 15.8
Average RMSD (Å) : 0.569 +/- 0.199

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXGhXh
(φψ)-conformation: aagpbb
Pattern: xxx[acfglmwy]x[aegknqrst]x[adegknq]x[dehknpqrst][acfgiptv]xx
Conservation:-0.434-0.544-0.4500.239-0.1820.164-0.1283.190-0.436-0.164-0.006-0.687-0.563
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1v_A_3711a1v   A378390AAKLVALGINAVAHHHHHHTT--EEEaaaaaaavxxxbx
1a8i_*_1351a8i   -144156LDSMATLGLAAYGHHHHHHTT--EEEaaaaaaavxxbbx
1a9x_A_10271a9x   A10301041RRSALQYKVHYD.HHHHHHTT-EEE.aaaaaaavxxbb.
1aw9_*_131aw9   -1931ATVLNEKGLDFEIHHHHHHTT--EEEaaaaaaalxxbbx
1b9h_A_3021b9h   A309321VDRLVEAGLPAFAHHHHHHTT--EEEaaaaaaagbxbbx
1brw_A_2111brw   A222234VDIGKRVGRRTMAHHHHHHTT-EEEEaaaaaaavxxbbb
1bx4_A_1761bx4   A183195AHHASENNRIFTLHHHHHHTT-EEEEaaaaaaalbxbbb
1cb0_A_1461cb0   A153164IETAKKLGLRCH.HHHHHHTT--EE.aaaaaaavxxbx.
1e4f_T_1081e4f   T119131LEKLKENGKTPLHHHHHHHTTEEEEEaaaaaaavbbwab
1ed8_A_1321ed8   A133145LEMAKAAGLATGNHHHHHHTT-EEEEaaaaaaagxxbbb
1eem_A_331eem   A3951RLVLKAKGIRHEVHHHHHHTT--EEEaaaaaaalxxbbb
1ejd_A_1891ejd   A195206ANFLVALGAKIS.HHHHHHTT-EEE.aaaaaaagxbbb.
1ejd_A_3341ejd   A335347VPELIRMGAHAEIHHHHHHTT-EEEEaaaaaaavxbbbx
1ew2_A_1321ew2   A133145MNRAKKAGKSVGVHHHHHHTT-EEEEaaaaaaavxxbbb
1f14_A_251f14   A3143AQVAAATGHTVVLHHHHHHTT-EEEEaaaaaaavxxbbx
1f5m_A_421f5m   A5466WHAYKSLAVDINWHHHHHHTT--EEEaaaaaaavxxxab
1f8r_A_431f8r   A4961AYVLAGAGHQVTVHHHHHHTT-EEEEaaaaaaagxxbbb
1g3q_A_1451g3q   A155167GIVLKKAGLAILGHHHHHHTT-EEEEaaaaaaagxxxae
1g5h_A_3661g5h   A377389LNELLENGISVWPHHHHHHTT--EEEaaaaaaavxxbxx
1g6s_A_481g6s   A5466LNALTALGVSYTLHHHHHHTT-EEEEaaaaaaavxxbbb
1gx3_A_701gx3   A7890GYVLEELGFEVERHHHHHHHT-EEEEaaaaaaagxbbbx
1gzs_B_1381gzs   B145157GEAAKNAGLPGTTHHHHHHTT--EEEaaaaaaavxxbbb
1ii5_A_1261ii5   A128140VDWANFYQADVREHHHHHHTT-EEEEaaaaaaalxxxbx
1itz_A_2141itz   A215227STRFEALGWHTIWHHHHHHTT-EEEEaaaaaaavxxbbb
1j33_A_841j33   A8698NQFALAADCAVYVHHHHHHTTEEEEEaaaaaaalbxbbb
1j5u_A_601j5u   A7082WILEISKGWAPWRHHHHHHTTEEEEEaaaaaaavbbxab
1j9j_A_1081j9j   A113125AMEGAMMNIPSIAHHHHHHTT--EEEaaaaaaalbwbbb
1jdp_A_1671jdp   A176188HEVFQEEGLHTSIHHHHHHHT-EEEEaaaaaaavxxbxb
1je0_A_1831je0   A187199FTLSKVKGWKSATHHHHHHHT-EEEEaaaaaaavxxbbb
1jid_A_461jid   A5062QDVCSAVGLNVFLHHHHHHTT--EEEaaaaaaavxxbbb
1jkm_A_3111jkm   A318330ARRLARAGVDVAAHHHHHHTT--EEEaaaaaaavxxbbb
1jkx_A_411jkx   A4355LERARQAGIATHTHHHHHHTT-EEEEaaaaaaavbpbbb
1jmk_C_811jmk   C90102AKKLEGQGRIVQRHHHHHHTT--EEEaaaaaaavxxbab
1juv_A_931juv   A95107QYITYISGGEIQVHHHHHHTT--EEEaaaaaaagxbbbb
1ks9_A_101ks9   A1628LTALCKQGHEVQGHHHHHHTT-EEEEaaaaaaavxxbbb
1l5x_A_1071l5x   A112124AFQAALLGIPALAHHHHHHTT--EEEaaaaaaavxwbbb
1lzl_A_2631lzl   A270282ALRLLQAGVSVELHHHHHHTT--EEEaaaaaaavxxbbb
1m3s_A_451m3s   A5567AMRLMHMGFNAHIHHHHHHTT--EEEaaaaaaavxapbb
1nw6_A_2551nw6   A257269ARVAIQEGRNSICHHHHHHTT-EEEEaaaaaaavbxbbb
1odk_A_1821odk   A186198FLLGRMRGVRTGAHHHHHHHT-EEEEaaaaaaavbxbbb
1oyw_A_2461oyw   A253265AARLQSKGISAAAHHHHHHTT--EEEaaaaaaavxxbbx
1oyw_A_301oyw   A3345IIDTVLSGRDCLVHHHHHHTT--EEEaaaaaaavxpbbb
1oyw_A_801oyw   A8294VDQLQANGVAAACHHHHHHTT--EEEaaaaaaavxxbbb
1pfk_A_1031pfk   A109121AMRLTEMGFPCIGHHHHHHTT--EEEaaaaaaagxwbbb
1pvy_A_31pvy   A719AIEALKKGEIILVHHHHHHTT--EEEaaaaaaavxxbbb
1qlw_A_2631qlw   A273285IDALNAAGGKGQLHHHHHHTT--EEEaaaaaaavxbbbb
1qmh_A_1401qmh   A141153EPLLAKIGIHQQTHHHHHHTT-EEEEaaaaaaavxbbbb
1qz3_A_2551qz3   A262274AEALNKAGVKVEIHHHHHHTT--EEEaaaaaaavxxbbb
1r1d_A_351r1d   A3547GRFLESKGYTCHAHHHHHHTT-EEEEaaaaaaavxxbbb
1r9l_A_1661r9l   A173185TISRYKEGKPVFYHHHHHHTT---EEaaaaaaavxxbbb
1rtq_A_2301rtq   A230241HASWHNAGYPAA.HHHHHHTT--EE.aaaaaaavbwbb.
1usg_A_1491usg   A159171QDGLKAANANVVFHHHHHHTT--EEEaaaaaaavxxxab
1vhw_A_1831vhw   A187199YGVAAEYGAKALAHHHHHHHT-EEEEaaaaaaavbbbbb
1vim_A_431vim   A5365AMRLMHLGYTVYVHHHHHHTT--EEEaaaaaaavxxbbb
1vjl_A_571vjl   A6274LSVLESLEARVDKHHHHHHTTEEEEEaaaaaaavbbxab
1vk3_A_2941vk3   A298310LEIARKHLLFGDVHHHHHHTT-EEEEaaaaaaavbbbbx
2fok_A_4212fok   A430442EFFMKVYGYRGKHHHHHHHT--EEEEaaaaaaagxbebx
2psp_A_262psp   A2636SDQCFTSGCCF..HHHHHHTT-EE..aaaaaaavbbb..
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8i_*_1351a8i   *     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 135
1a8i_*_1351a8i   *     GLSBETA-D-GLUCOPYRANOSE SPIROHYDANTOIN G - 135
1a8i_*_1351a8i   *     GLSBETA-D-GLUCOPYRANOSE SPIROHYDANTOIN L - 136
1a8i_*_1351a8i   *     GLSBETA-D-GLUCOPYRANOSE SPIROHYDANTOIN G - 137
1a8i_*_1351a8i   *     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 138
1a8i_*_1351a8i   *     GLSBETA-D-GLUCOPYRANOSE SPIROHYDANTOIN L - 139
1a9x_A_10271a9x   A     ORNORNITHINE H - 1039
1a9x_A_10271a9x   A     ORNORNITHINE Y - 1040
1a9x_A_10271a9x   A     ORNORNITHINE D - 1041
1aw9_*_131aw9   *     CDCADMIUM ION G - 26
1aw9_*_131aw9   *     CDCADMIUM ION L - 27
1aw9_*_131aw9   *     CDCADMIUM ION D - 28
1brw_A_2111brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID E - 213
1brw_A_2111brw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID R - 216
1bx4_A_1761bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED N - 196
1ed8_A_1321ed8   A     ZNZINC ION S - 147
1ed8_A_1321ed8   A     MGMAGNESIUM ION S - 147
1ed8_A_1321ed8   A     ZNZINC ION A - 149
1ed8_A_1321ed8   A     MGMAGNESIUM ION A - 149
1eem_A_331eem   A     GSHGLUTHATHIONE P - 33
1eem_A_331eem   A     GSHGLUTHATHIONE F - 34
1eem_A_331eem   A     GSHGLUTHATHIONE A - 35
1eem_A_331eem   A     GSHGLUTHATHIONE R - 37
1ejd_A_1891ejd   A     PO4PHOSPHATE ION P - 189
1ejd_A_1891ejd   A     PO4PHOSPHATE ION E - 190
1ew2_A_1321ew2   A     MGMAGNESIUM ION T - 147
1ew2_A_1321ew2   A     MGMAGNESIUM ION T - 149
1f8r_A_431f8r   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 43
1f8r_A_431f8r   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 44
1f8r_A_431f8r   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 45
1f8r_A_431f8r   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 62
1g3q_A_1451g3q   A     ADPADENOSINE-5'-DIPHOSPHATE N - 171
1g3q_A_1451g3q   A     ADPADENOSINE-5'-DIPHOSPHATE R - 172
1g3q_A_1451g3q   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 173
1g5h_A_3661g5h   A     MSESELENOMETHIONINE W - 388
1g6s_A_481g6s   A     GPJGLYPHOSATE D - 49
1g6s_A_481g6s   A     FMTFORMIC ACID L - 54
1g6s_A_481g6s   A     FMTFORMIC ACID L - 57
1g6s_A_481g6s   A     FMTFORMIC ACID T - 58
1g6s_A_481g6s   A     FMTFORMIC ACID V - 62
1g6s_A_481g6s   A     FMTFORMIC ACID S - 63
1g6s_A_481g6s   A     FMTFORMIC ACID Y - 64
1g6s_A_481g6s   A     FMTFORMIC ACID T - 65
1g6s_A_481g6s   A     FMTFORMIC ACID L - 66
1ii5_A_1261ii5   A     GLUGLUTAMIC ACID T - 126
1ii5_A_1261ii5   A     GLUGLUTAMIC ACID A - 127
1j5u_A_601j5u   A     MSESELENOMETHIONINE K - 84
1j5u_A_601j5u   A     MSESELENOMETHIONINE E - 86
1j9j_A_1081j9j   A     MGMAGNESIUM ION T - 109
1je0_A_1831je0   A     PO4PHOSPHATE ION L - 201
1jkx_A_411jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE R - 45
1juv_A_931juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE W - 93
1l5x_A_1071l5x   A     GOLGLYCEROL A - 116
1l5x_A_1071l5x   A     GOLGLYCEROL L - 117
1l5x_A_1071l5x   A     GOLGLYCEROL L - 118
1l5x_A_1071l5x   A     GOLGLYCEROL G - 119
1l5x_A_1071l5x   A     MSESELENOMETHIONINE P - 121
1l5x_A_1071l5x   A     MSESELENOMETHIONINE A - 122
1l5x_A_1071l5x   A     MSESELENOMETHIONINE L - 123
1l5x_A_1071l5x   A     MSESELENOMETHIONINE A - 127
1l5x_A_1071l5x   A     GOLGLYCEROL A - 127
1nw6_A_2551nw6   A     SFGADENOSYL-ORNITHINE T - 270
1nw6_A_2551nw6   A     SFGADENOSYL-ORNITHINE D - 271
1oyw_A_301oyw   A     MSESELENOMETHIONINE Q - 30
1oyw_A_301oyw   A     MNMANGANESE (II) ION E - 31
1oyw_A_301oyw   A     MSESELENOMETHIONINE I - 33
1oyw_A_301oyw   A     MNMANGANESE (II) ION D - 35
1oyw_A_301oyw   A     MSESELENOMETHIONINE V - 37
1oyw_A_301oyw   A     MSESELENOMETHIONINE D - 42
1oyw_A_301oyw   A     MSESELENOMETHIONINE C - 43
1oyw_A_301oyw   A     MSESELENOMETHIONINE L - 44
1oyw_A_301oyw   A     MSESELENOMETHIONINE V - 45
1oyw_A_801oyw   A     MSESELENOMETHIONINE D - 80
1oyw_A_801oyw   A     MSESELENOMETHIONINE Q - 81
1oyw_A_801oyw   A     MSESELENOMETHIONINE V - 82
1oyw_A_801oyw   A     MSESELENOMETHIONINE D - 83
1oyw_A_801oyw   A     MSESELENOMETHIONINE C - 94
1oyw_A_801oyw   A     MSESELENOMETHIONINE L - 95
1oyw_A_2461oyw   A     MSESELENOMETHIONINE T - 252
1oyw_A_2461oyw   A     MSESELENOMETHIONINE R - 255
1oyw_A_2461oyw   A     MSESELENOMETHIONINE L - 256
1oyw_A_2461oyw   A     MSESELENOMETHIONINE K - 259
1oyw_A_2461oyw   A     MSESELENOMETHIONINE I - 261
1pfk_A_1031pfk   A     FBPFRUCTOSE-1,6-DIPHOSPHATE D - 103
1pfk_A_1031pfk   A     ADPADENOSINE-5'-DIPHOSPHATE D - 103
1pfk_A_1031pfk   A     MGMAGNESIUM ION D - 103
1pfk_A_1031pfk   A     ADPADENOSINE-5'-DIPHOSPHATE G - 104
1pfk_A_1031pfk   A     MGMAGNESIUM ION G - 104
1pfk_A_1031pfk   A     ADPADENOSINE-5'-DIPHOSPHATE S - 105
1pfk_A_1031pfk   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 106
1pfk_A_1031pfk   A     ADPADENOSINE-5'-DIPHOSPHATE M - 107
1pfk_A_1031pfk   A     ADPADENOSINE-5'-DIPHOSPHATE G - 108
1pfk_A_1031pfk   A     ADPADENOSINE-5'-DIPHOSPHATE A - 109
1pfk_A_1031pfk   A     ADPADENOSINE-5'-DIPHOSPHATE R - 111
1r1d_A_351r1d   A     MSESELENOMETHIONINE G - 35
1r1d_A_351r1d   A     MSESELENOMETHIONINE R - 36
1r1d_A_351r1d   A     MSESELENOMETHIONINE F - 37
1r1d_A_351r1d   A     MSESELENOMETHIONINE L - 38
1r9l_A_1661r9l   A     BETTRIMETHYL GLYCINE Y - 186
1r9l_A_1661r9l   A     BETTRIMETHYL GLYCINE W - 188
1vhw_A_1831vhw   A     ADNADENOSINE S - 204
1vhw_A_1831vhw   A     ADNADENOSINE D - 205
1vjl_A_571vjl   A     MSESELENOMETHIONINE K - 74
1vjl_A_571vjl   A     MSESELENOMETHIONINE I - 76
1vk3_A_2941vk3   A     MSESELENOMETHIONINE R - 296
1vk3_A_2941vk3   A     MSESELENOMETHIONINE I - 297
1vk3_A_2941vk3   A     MSESELENOMETHIONINE L - 298
1vk3_A_2941vk3   A     MSESELENOMETHIONINE I - 300
1vk3_A_2941vk3   A     MSESELENOMETHIONINE A - 301
1vk3_A_2941vk3   A     MSESELENOMETHIONINE H - 304
1vk3_A_2941vk3   A     MSESELENOMETHIONINE L - 305
1vk3_A_2941vk3   A     MSESELENOMETHIONINE L - 306
2psp_A_262psp   A     PCAPYROGLUTAMIC ACID C - 29
2psp_A_262psp   A     PCAPYROGLUTAMIC ACID F - 30
2psp_A_262psp   A     PCAPYROGLUTAMIC ACID T - 31
2psp_A_262psp   A     PCAPYROGLUTAMIC ACID S - 32
2psp_A_262psp   A     PCAPYROGLUTAMIC ACID G - 33
2psp_A_262psp   A     PCAPYROGLUTAMIC ACID C - 34
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gx3_A_701gx3   A TRADEDUCED FROM INHIBITOR BINDING TO SALMONELLA ENZYMEC - 70

Clusters included in this Subclass
CLUSTER: HE.2.11
CLUSTER: HE.3.9
CLUSTER: HE.4.12
CLUSTER: HE.5.18