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PDB code:

Information on SUBCLASS 2.2.3

Subclass Accession number: 123 Subclass: 2.2.3 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 33 Average sequence ID (%) : 14.6 +/- 15.2 Average RMSD (Å) : 0.612 +/- 0.134 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bf2_*_270	1bf2	-	279	290	VQAFHNAGIKVY	HHHHHHTT-EEE	aaaaaaavbxbb
1c0a_A_132	1c0a	A	149	159	RRFMDDHGFLD.	HHHHHHTT-EE.	aaaaaaavxxx.
1c0p_A_1139	1c0p	A	1147	1158	ARELQKLGATFE	HHHHHHTT-EEE	aaaaaaavxbbb
1d2f_A_122	1d2f	A	125	136	YKAIEGNQRTVM	HHHHHHTT-EEE	aaaaaaalbxxb
1dzo_A_43	1dzo	A	47	58	VEEALSRGWSVK	HHHHHHTT-EEE	aaaaaaavxxbb
1e5k_A_157	1e5k	A	158	169	MVFMRLAGGHAV	HHHHHHTT-EEE	aaaaaaavxbxb
1ecs_A_14	1ecs	A	18	29	AAFYERLGFGIV	HHHHHTTT-EEE	aaaaaaavxbxa
1ezv_A_79	1ezv	A	82	93	SAVAAKEGLALS	HHHHHHTT-EEE	aaaaaaavbbbb
1ff9_A_109	1ff9	A	109	120	DQAAKDAGITVM	HHHHHHTT-EEE	aaaaaaavbbbx
1gca_*_153	1gca	-	163	174	VKELNDKGIQTE	HHHHHHTT--EE	aaaaaaavbxbb
1gde_A_179	1gde	A	186	197	ADFVVEHDLIVI	HHHHHHTT-EEE	aaaaaaalxbbb
1h7w_A_238	1h7w	A	245	256	IELMKDLGVKII	HHHHHTTT-EEE	aaaaaaavxbbb
1hc7_A_41	1hc7	A	55	65	DRMFKETGHQN.	HHHHHHTT-EE.	aaaaaaavxbx.
1j18_A_313	1j18	A	317	328	LDAFKSAKLDVT	HHHHHHTT-EEE	aaaaaaalbxbb
1j7n_A_68	1j7n	A	71	82	LEMYKAIGGKIY	HHHHHHTT-EEE	aaaaaaavxbbb
1jv1_A_418	1jv1	A	430	440	HCWVLNAGGHF.	HHHHHHTT-EE.	aaaaaaavxbb.
1ky8_A_342	1ky8	A	352	363	IEDAVEKGGRVL	HHHHHHTT-EEE	aaaaaaagxbxa
1lrz_A_130	1lrz	A	132	142	FDKMSNLGFEH.	HHHHHHTT-EE.	aaaaaaavxxx.
1m7x_A_315	1m7x	A	322	333	IDAAHAAGLNVI	HHHHHHTT-EEE	aaaaaaavbxbb
1mk4_A_113	1mk4	A	116	126	IAYHTKLGFDI.	HHHHHHTT-EE.	aaaaaaavxxb.
1nmo_A_80	1nmo	A	83	94	LKTLLANDINLY	HHHHHHTT-EEE	aaaaaaalxxbb
1nnh_A_12	1nnh	A	26	37	TDFFVKEGFKWL	HHHHHHTT-EEE	aaaaaaavxxxx
1qus_A_292	1qus	A	292	302	ISQLAAAGLTP.	HHHHHHTT-EE.	aaaaaaagbbx.
1qxy_A_144	1qxy	A	151	161	HNTARQNDLKV.	HHHHHHTT-EE.	aaaaaaavbbb.
1riq_A_394	1riq	A	398	408	DEIAREKGLGI.	HHHHHTTT-EE.	aaaaaaavxbb.
1tif_*_31	1tif	-	35	46	LEIAARRNLDLV	HHHHHHTT-EEE	aaaaaaalbbbb
1ukf_A_153	1ukf	A	159	169	TAVIEDAGFSL.	HHHHHHTT-EE.	aaaaaaavxbx.
1v6s_A_33	1v6s	A	42	53	LRHLLAGGASLV	HHHHHHTT-EEE	aaaaaaavbbbb
1ve9_A_141	1ve9	A	149	160	TERLTERGVKFF	HHHHHTTT-EEE	aaaaaaavxxbb
1vk3_A_415	1vk3	A	427	437	VRKTLSVGAEP.	HHHHHHTT-EE.	aaaaaaavxxp.
1vk3_A_554	1vk3	A	557	568	VETFREYGLKIE	HHHHHHTT-EEE	aaaaaaavbbbb
1xgs_A_30	1xgs	A	38	48	EKMIMELGGKP.	HHHHHHTT-EE.	aaaaaaagbbx.
2dkb_*_225	2dkb	-	230	241	KRKCEARGMLLI	HHHHHHTT-EEE	aaaaaaavbxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d2f_A_122	1d2f	A	PLPPYRIDOXAL-5'-PHOSPHATE	F - 124
1ecs_A_14	1ecs	A	CACALCIUM ION	A - 19
1ecs_A_14	1ecs	A	CACALCIUM ION	E - 22
1ecs_A_14	1ecs	A	PG4TETRAETHYLENE GLYCOL	V - 29
1ecs_A_14	1ecs	A	PG4TETRAETHYLENE GLYCOL	F - 30
1gca_*_153	1gca	*	GALD-GALACTOSE	D - 154
1gca_*_153	1gca	*	CACALCIUM ION	D - 154
1gca_*_153	1gca	*	GALD-GALACTOSE	A - 155
1gca_*_153	1gca	*	CACALCIUM ION	A - 155
1gca_*_153	1gca	*	GALD-GALACTOSE	R - 158
1gca_*_153	1gca	*	CACALCIUM ION	R - 158
1gde_A_179	1gde	A	PLPPYRIDOXAL-5'-PHOSPHATE	D - 199
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	R - 80
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	N - 81
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	R - 82
1nmo_A_80	1nmo	A	MSESELENOMETHIONINE	L - 83
1qxy_A_144	1qxy	A	ACTACETATE ION	H - 151
1qxy_A_144	1qxy	A	ACTACETATE ION	A - 154
1qxy_A_144	1qxy	A	ACTACETATE ION	L - 159
1qxy_A_144	1qxy	A	ACTACETATE ION	K - 160
1qxy_A_144	1qxy	A	ACTACETATE ION	V - 161
1riq_A_394	1riq	A	MSESELENOMETHIONINE	I - 400
1tif_*_31	1tif	*	PBMTRIMETHYL LEAD ION	Q - 32
1tif_*_31	1tif	*	PBMTRIMETHYL LEAD ION	E - 33
1tif_*_31	1tif	*	PBMTRIMETHYL LEAD ION	E - 36
1ve9_A_141	1ve9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 145
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	T - 415
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	Y - 416
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	T - 419
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	V - 423
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	S - 426
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	V - 427
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	R - 428
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	T - 430
1vk3_A_415	1vk3	A	MSESELENOMETHIONINE	P - 437
2dkb_*_225	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	D - 243

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e5k_A_157	1e5k	A	CI1CITRIC ACID BINDING SITE FOR RESIDUE 302	M - 158

Clusters included in this Subclass

CLUSTER: HE.4.6

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