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Information on SUBCLASS 2.2.5
Subclass Accession number: 125
Subclass: 2.2.5 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 15.5 +/- 16.4
Average RMSD (Å) : 0.569 +/- 0.202

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XXGhXh
(φψ)-conformation: aagpbb
Pattern: x[afglmvy]xxx[DG][acfgily][akrst][filmpvy]x
Conservation:-0.032-0.400-0.593-0.737-0.0982.708-0.7220.0640.074-0.263
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bgx_T_7641bgx   T771780RLEEMGARMLHHHHHT-EEEaaaaavbbxa
1chu_A_2231chu   A227236MAWRAGCRVAHHHHTT--EEaaaaagxxbb
1cjx_A_271cjx   A2938IFEIMGFTKVHHHHTT-EEEaaaaavxbxa
1j1y_A_41j1y   A514FMEALGLKVLHHHHTT-EEEaaaaavxbxa
1n62_C_1251n62   C128137LMQCLGAAYEHHHHHT-EEEaaaaavxbxx
1n71_A_1441n71   A146155FYEKLGYKIVHHHHTT-EEEaaaaavxbxa
1nri_A_421nri   A6372QAFQQGGRLIHHHHTT--EEaaaaavxbbb
1pfk_A_401pfk   A4251LGLYEDRMVQHHHHTT-EEEaaaaalbbbx
1q9i_A_3441q9i   A348357VAENAGGALKHHHHTT--EEaaaaagxxbb
1qo8_A_3391qo8   A343352MAKEIGASMTHHHHTTB-EEaaaaagxxbb
1qus_A_2921qus   A294302QLAAAGLTP.HHHHTT-EE.aaaaagbbx.
1t7p_A_391t7p   A4857AEVARGGLIVHHHHTT--EEaaaaavxbbb
1vh5_A_201vh5   A2029MVGFLDIRFEHHHHTT-EEEaaaaavxbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j1y_A_41j1y   A     MGMAGNESIUM ION A - 8
1n62_C_1251n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE M - 125
1n62_C_1251n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE P - 126
1n62_C_1251n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE L - 138
1n71_A_1441n71   A     COACOENZYME A Y - 144
1n71_A_1441n71   A     COACOENZYME A E - 145
1n71_A_1441n71   A     COACOENZYME A F - 146
1n71_A_1441n71   A     COACOENZYME A Y - 147
1n71_A_1441n71   A     COACOENZYME A K - 149
1n71_A_1441n71   A     COACOENZYME A L - 150
1nri_A_421nri   A     MSESELENOMETHIONINE V - 43
1nri_A_421nri   A     MSESELENOMETHIONINE P - 44
1nri_A_421nri   A     MSESELENOMETHIONINE I - 47
1nri_A_421nri   A     MSESELENOMETHIONINE L - 51
1nri_A_421nri   A     MSESELENOMETHIONINE I - 54
1nri_A_421nri   A     MSESELENOMETHIONINE V - 58
1nri_A_421nri   A     MSESELENOMETHIONINE V - 62
1nri_A_421nri   A     MSESELENOMETHIONINE F - 65
1nri_A_421nri   A     MSESELENOMETHIONINE G - 69
1nri_A_421nri   A     MSESELENOMETHIONINE R - 70
1nri_A_421nri   A     MSESELENOMETHIONINE L - 71
1nri_A_421nri   A     MSESELENOMETHIONINE I - 72
1pfk_A_401pfk   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 41
1q9i_A_3441q9i   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 344
1q9i_A_3441q9i   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 345
1q9i_A_3441q9i   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 348
1qo8_A_3391qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 339
1qo8_A_3391qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 340
1qo8_A_3391qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 343

Clusters included in this Subclass
CLUSTER: HE.3.14