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Information on SUBCLASS 4.13.3
Subclass Accession number: 1273
Subclass: 4.13.3 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 6.0 +/- 8.7
Average RMSD (Å) : 1.360 +/- 0.329

Consensus geometry
d (Å): 15 delta (°): 0-45 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: pphXXphp
(φψ)-conformation: bbppppaa
Pattern: [aflt]x[KNQW][agvy]xx[NPQST][aivy][DEPS]x[ALV][agq][KQRS][IKLV]x
Conservation:-0.369-0.4910.473-0.794-1.219-1.2190.359-0.5521.017-0.7341.612-0.4591.8691.079-0.570
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gpm_A_4821gpm   A483497AHWAHLPYDFLGRVSEEE----HHHHHHHHbbxxxxpaaaaaaaa
1kbl_A_3301kbl   A336350TRNGKRTAPAALQIAEEE----HHHHHHHHbbxxxbxaaaaaaaa
1n7v_A_861n7v   A86100FGQYISNISSAQSVHEEE---SHHHHHHHHbbbxxxbaaaaaaaa
1qgw_A_381qgw   A4458STKVTVSESDAAKKLEEE----HHHHHHHHbbxxbbxaaaaaaaa
1st0_A_781st0   A8498LEKTPFQVEQVAQLLEEE----HHHHHHHHbbxxwxbaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1qgw_A_381qgw   A     DBV15,16-DIHYDROBILIVERDIN M - 38
1qgw_A_381qgw   A     PEBPHYCOERYTHROBILIN M - 38
1qgw_A_381qgw   A     DBV15,16-DIHYDROBILIVERDIN M - 39
1qgw_A_381qgw   A     PEBPHYCOERYTHROBILIN M - 39
1qgw_A_381qgw   A     PEBPHYCOERYTHROBILIN V - 40
1qgw_A_381qgw   A     DBV15,16-DIHYDROBILIVERDIN K - 41
1st0_A_781st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE I - 83
1st0_A_781st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE E - 85
1st0_A_781st0   A     YT3YTTRIUM (III) ION E - 92

Clusters included in this Subclass
CLUSTER: EH.3.128