ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.16.3

Subclass Accession number: 1287
Subclass: 4.16.3

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.3 (>50 %)  1.3.1 (>50 %)  1.3.1.26
GO : GO:0008839 (>50 %)  GO:0016627 (>50 %)  GO:0016628 (>50 %)
SCOP : 51734 (>50 %)  51735 (>50 %)  51800 (>50 %)  55346 (>50 %)  55347 (>50 %)  55368 (>50 %)

Number of loops: 5

Average sequence ID (%) : 10.0 +/- 11.9
Average RMSD (Å) : 1.020 +/- 0.259

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XXXXcpXp
(φψ)-conformation:	bbapapaa

Pattern:	x	[AFLV]	x	x	[acdt]	[acgt]	[DGV]	[DNS]	x	x	x	x	x	[aqr]	[AL]	[akn]	[AEKRS]	[agly]
Conservation:	-0.889	0.663	0.273	-0.655	-0.548	-0.548	1.156	2.318	-0.977	0.623	0.060	-1.298	-0.788	-0.007	1.575	-0.506	0.632	-1.084

Loops included in this Subclass

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f74_A_160	1f74	A	NAY6,7,8,9-TETRAHYDROXY-5-METHYLCARBOXAMIDO-2-OXONONANOIC ACID	K - 164
1f74_A_160	1f74	A	NAY6,7,8,9-TETRAHYDROXY-5-METHYLCARBOXAMIDO-2-OXONONANOIC ACID	T - 166
1gqi_A_32	1gqi	A	EDO1,2-ETHANEDIOL	R - 51
1jw9_B_124	1jw9	B	ZNZINC ION	N - 139
1l1s_A_4	1l1s	A	MSESELENOMETHIONINE	D - 11
1l1s_A_4	1l1s	A	MSESELENOMETHIONINE	E - 12
1l1s_A_4	1l1s	A	MSESELENOMETHIONINE	D - 13
1l1s_A_4	1l1s	A	MSESELENOMETHIONINE	N - 24
1l1s_A_4	1l1s	A	MSESELENOMETHIONINE	V - 25
1l1s_A_4	1l1s	A	MSESELENOMETHIONINE	R - 26
1l1s_A_4	1l1s	A	MSESELENOMETHIONINE	N - 27

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gqi_A_32	1gqi	A	AC3EDO BINDING SITE FOR CHAIN A	R - 51

Clusters included in this Subclass