Information on SUBCLASS 3.5.2 |
Subclass Accession number: 129
Subclass: 3.5.2 Type: HE alpha-beta DB: ArchDB-KI |
Number of loops: 3 Average sequence ID (%) : 14.8 +/- 0.3 Average RMSD (Å) : 1.29 +/- 0.38 Consensus geometry
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Consensus Sequence: | XXGXhXX |
(φψ)-conformation: | aalbpbb |
Pattern: | [EK] | [GL] | x | x | x | x | [FLM] | x | x | x | [KL] | x | [G] | x | [AP] | x | x | x |
Conservation: | 1.159 | -0.163 | -0.714 | -0.861 | -0.273 | -0.714 | 0.461 | -0.640 | -0.200 | -0.714 | 0.215 | -0.640 | 3.030 | -0.494 | 1.019 | 0.885 | -0.640 | -0.714 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e4y_A_13 | 1e4y | A | 13 | 30 | KGTQAQFIMEKYGIPQIS | HHHHHHHHHHHTT--EEE | aaaaaaaaaaaalbpxbx |
1gc5_A_78 | 1gc5 | A | 80 | 97 | ELLGGILRSIKLGKAMEW | HHHHHHHHHHHS---EEE | aaaaaaaaaaaalbxbbb |
1kbl_A_595 | 1kbl | A | 599 | 616 | KGDFKAMYKALEGRPMTV | HHHHHHHHHHHTT--EEE | aaaaaaaaaaalvxxbxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e4y_A_13 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | K - 13 |
1e4y_A_13 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | G - 14 |
1e4y_A_13 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | T - 15 |
1e4y_A_13 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | Q - 16 |
1e4y_A_13 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | S - 30 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e4y_A_13 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | K - 13 |
1e4y_A_13 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | G - 14 |
1e4y_A_13 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | T - 15 |
Bibliographic annotations |
Loop | PDB | Chain | Annotation | Residue |
1kbl_A_595 | 1kbl RefO.HERZBERG,C.C.CHEN,S.LIU,A.TEMPCZYK,A.HOWARD,M.WEI,D.YE,D.DUNAWAY-MARIANO. PYRUVATE SITE OF PYRUVATE PHOSPHATE DIKINASE: CRYSTAL STRUCTURE OF THE ENZYME-PHOSPHONOPYRUVATE COMPLEX, AND MUTANT ANALYSIS. BIOCHEMISTRY v.41;780,2002 | A | INHIBITOR BINDING RESIDUE | R - 617 |
Clusters included in this Subclass |
CLUSTER: HE.5.15 |