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Information on SUBCLASS 2.2.11
Subclass Accession number: 131
Subclass: 2.2.11 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.3 +/- 12.6
Average RMSD (Å) : 1.000 +/- 0.100

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXXX
(φψ)-conformation: aagpbb
Pattern: [GLT]xx[ANQ]x[CIL][AKQ][DNR][ER][L][GKV][KP]xxx[KV][NV]x[GIV][FIP]
Conservation:-1.148-0.829-0.510-0.298-0.9350.5530.0210.3401.3652.572-1.1481.789-0.1910.659-0.6160.385-0.228-0.228-0.616-0.935
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dfm_A_501dfm   A5271GTNQYIKDELVPKHWKNNIPHHHHHHHHHHGGGT-EEEEEaaaaaaaaaaaaavxxblxx
1gp1_A_481gp1   A5372TQMNDLQRRLGPRGLVVLGFHHHHHHHHHHGGGTEEEEEEaaaaaaaaaaaaagxbxbbb
1i8t_A_111i8t   A1130LFGAVCANELKKLNKKVLVIHHHHHHHHHHGGGT--EEEEaaaaaaaaaaaaavxxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dfm_A_501dfm   A     MSESELENOMETHIONINE G - 52
1dfm_A_501dfm   A     MSESELENOMETHIONINE T - 53
1dfm_A_501dfm   A     CACALCIUM ION N - 54
1dfm_A_501dfm   A     MSESELENOMETHIONINE Y - 56
1dfm_A_501dfm   A     CACALCIUM ION Y - 56
1dfm_A_501dfm   A     MSESELENOMETHIONINE I - 57
1dfm_A_501dfm   A     MSESELENOMETHIONINE P - 71
1gp1_A_481gp1   A     SEC2-AMINO-3-SELENINO-PROPIONIC ACID T - 48
1gp1_A_481gp1   A     SEC2-AMINO-3-SELENINO-PROPIONIC ACID V - 49
1gp1_A_481gp1   A     SEC2-AMINO-3-SELENINO-PROPIONIC ACID D - 51
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 11
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 12
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 13
1i8t_A_111i8t   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 30

Clusters included in this Subclass
CLUSTER: HE.5.176