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Information on SUBCLASS 4.25.3
Subclass Accession number: 1312
Subclass: 4.25.3 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 11.9 +/- 13.6
Average RMSD (Å) : 1.100 +/- 0.200

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXpXhDXX
(φψ)-conformation: bbpbapaa
Pattern: [ILM][FGI]x[DE]x[LP][D][MPT]x[KNS]xxxx
Conservation:0.661-0.761-0.3551.391-0.355-0.1812.760-0.287-0.7610.255-0.490-0.626-0.693-0.558
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gjw_A_4101gjw   A411424MIAEELDMEKDKASEEE----GGGHHHHxbxxbaxaaaaaaa
1o54_A_1701o54   A173186LFLDVPDPWNYIDKEEE--S-GGGTHHHbbbbbabaaaaaaa
1of8_A_1551of8   A155168IGSEMLDTISPQYLEEEE--SSSTHHHHbbbxxaxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gjw_A_4101gjw   A     GLCGLUCOSE A - 413
1gjw_A_4101gjw   A     MALMALTOSE E - 414
1gjw_A_4101gjw   A     GLCGLUCOSE E - 414
1gjw_A_4101gjw   A     GLCGLUCOSE E - 415
1gjw_A_4101gjw   A     GLCGLUCOSE K - 420
1gjw_A_4101gjw   A     GLCGLUCOSE A - 423
1gjw_A_4101gjw   A     GLCGLUCOSE S - 424
1gjw_A_4101gjw   A     GLCGLUCOSE A - 427
1of8_A_1551of8   A     PEPPHOSPHOENOLPYRUVATE E - 158
1of8_A_1551of8   A     G3P3-PHOSPHOGLYCEROL E - 158
1of8_A_1551of8   A     GOLGLYCEROL L - 160
1of8_A_1551of8   A     GOLGLYCEROL D - 161
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gjw_A_4101gjw   A GLCGLC BINDING SITE FOR CHAIN AE - 415
1gjw_A_4101gjw   A GLCGLC BINDING SITE FOR CHAIN AA - 423
1gjw_A_4101gjw   A GLCGLC BINDING SITE FOR CHAIN AS - 424
1gjw_A_4101gjw   A GLCGLC BINDING SITE FOR CHAIN AA - 427
1of8_A_1551of8   A AC2PEP BINDING SITE FOR CHAIN AE - 158
1of8_A_1551of8   A AC5GOL BINDING SITE FOR CHAIN BD - 161

Clusters included in this Subclass
CLUSTER: EH.7.126