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Information on SUBCLASS 5.1.3
Subclass Accession number: 1361
Subclass: 5.1.3 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.1 (>75 %)  1.1.1 (>75 %)  1.1.1.1 (>75 %)  3.1 (>75 %)  3.1.1 (>75 %)  3.1.1.4
GO : GO:0004022 (>50 %)  GO:0005509 (>75 %)  GO:0008270 (>50 %)  GO:0016298 (>75 %)  GO:0016614 (>50 %)  GO:0016616 (>50 %)  GO:0016788 (>75 %)  GO:0016789 (>75 %)  GO:0046914 (>50 %)  
SCOP : 48618 (>75 %)  48619 (>75 %)  48623 (>75 %)  50128 (>75 %)  50129 (>75 %)  50136 (>75 %)  51734 (>75 %)  51735 (>75 %)  51736 (>75 %)  
Number of loops: 7

Average sequence ID (%) : 8.8 +/- 12.0
Average RMSD (Å) : 0.886 +/- 0.227

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XhXXpXXpp
(φψ)-conformation: bbpaappaa
Pattern: x[lmvy]x[cgilmv][agqrs]x[DEGQRT]x[EGPST][denqs][adekq][DEST][fgkv][aem]x[aikltv][afl][ekrs]x
Conservation:-1.4300.430-0.952-0.863-0.403-0.8610.2580.3330.6240.5031.0722.743-1.092-0.087-0.801-0.2600.6040.936-0.756
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d0n_A_4581d0n   A464482YNWQGAQSTQDEVAASAILEEEE-TTS-HHHHHHHHHHbbxbxaaxxaaaaaaaaaa
1d3g_A_2511d3g   A253271LVKIAPDLTSQDKEDIASVEEEE-S---HHHHHHHHHHbbbbxaaxxaaaaaaaaaa
1jak_A_3571jak   A359377QYWGLDRTGDAEKAEVAEAEE---TTS-HHHHHHHHHHbxaxbaappaaaaaaaaaa
1kqf_A_1611kqf   A162180GMLCASGASNETGMLTQKFEEE--TTS-HHHHHHHHHHbbbbxaabxaaaaaaaaaa
1l9x_A_461l9x   A4765VVPVRLDLTEKDYEILFKSEEEE-SS--HHHHHHHHHHbbwbxaaxxaaaaaaaaaa
1rkd_*_1371rkd   -137155ALLMQLESPLESVMAAAKIEEEE-SSS-HHHHHHHHHHbbbbbaabpaaaaaaaaaa
1tig_*_851tig   -87105EVRLSPTIEEHDFNTKLRNEEEE-TT--HHHHHHHHHHbbxbxaaxxaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d3g_A_2511d3g   A     FMNFLAVIN MONONUCLEOTIDE K - 255
1d3g_A_2511d3g   A     OROOROTIC ACID K - 255
1jak_A_3571jak   A     IFG(2R,3R,4S,5R)-2-ACETAMIDO-3,4-DIHYDROXY-5-HYDROXYMETHYL-PIPERIDINIUM W - 361
1jak_A_3571jak   A     GOLGLYCEROL W - 361
1jak_A_3571jak   A     GOLGLYCEROL G - 362
1jak_A_3571jak   A     GOLGLYCEROL L - 363
1jak_A_3571jak   A     GOLGLYCEROL D - 364
1jak_A_3571jak   A     GOLGLYCEROL R - 365
1jak_A_3571jak   A     GOLGLYCEROL T - 366
1jak_A_3571jak   A     GOLGLYCEROL E - 370
1kqf_A_1611kqf   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE A - 166
1kqf_A_1611kqf   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE G - 168
1kqf_A_1611kqf   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE A - 169
1kqf_A_1611kqf   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE S - 170
1rkd_*_1371rkd   *     RIBRIBOSE E - 143
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1rkd_*_1371rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.E - 143

Clusters included in this Subclass
CLUSTER: EH.4.128
CLUSTER: EH.6.98